Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1672 111 1e-19 seq2652 109 5e-19 >seq1672 Length=23672 Score = 111 bits (122), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 45102 TTTTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 |||| ||||| | || ||||| || | || ||| || || || || || ||||| |||| Sbjct 22084 TTTTTTTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGA 22143 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 | || |||||||| | ||| | || || | || || || ||| | |||| || | Sbjct 22144 TGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCT 22203 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTG 45278 ||||||| |||||||||||||| || || ||||| || || || | || | || | | | Sbjct 22204 GCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAG 22262 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || || | ||| || ||||| |||| || |||||||| | || || || || || ||| Sbjct 22263 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 22322 Query 45339 AT 45340 || Sbjct 22323 AT 22324 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || || || ||||| ||||| || |||||| Sbjct 23007 ATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 23066 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | || || || ||| | |||| || |||||||| ||| Sbjct 23067 CTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 23126 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || ||||| || || || | || | || | | ||| || | ||| Sbjct 23127 GGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTC 23185 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| |||| || |||||||| | || || || || || |||||| Sbjct 23186 CACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATC 23237 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || || || ||||| ||||| || || ||| Sbjct 22551 ATACCGCCTCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 22610 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | || || || ||| | |||| || |||||||| ||| Sbjct 22611 CTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 22670 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || ||||| || || |||| || | || | | ||| || | ||| Sbjct 22671 GGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTC 22729 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || |||||||| | || || || || || ||||| Sbjct 22730 CACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 22780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || || || ||||| ||||| || || ||| Sbjct 22323 ATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 22382 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | || || || ||| | |||| || |||||||| ||| Sbjct 22383 CTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 22442 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || ||||| || || || | || | || | | ||| |||| ||| Sbjct 22443 GGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTC 22501 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| |||||||| | || || || || || ||||| Sbjct 22502 CACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 >seq2652 Length=38300 Score = 109 bits (120), Expect = 5e-19 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 45102 TTTTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 |||| ||||| | || ||||| || | || ||| || || || || || ||||| |||| Sbjct 33036 TTTTTTTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGA 33095 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 | || |||||||| | ||| | || || | || || || ||| | |||| || | Sbjct 33096 TGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCT 33155 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTG 45278 ||||||| |||||||||||||| || || ||||| || || || | || | || | | Sbjct 33156 GCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGNTCGAG 33214 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || || | ||| || ||||| |||| || |||||||| | || || || || || ||| Sbjct 33215 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 33274 Query 45339 ATC 45341 ||| Sbjct 33275 ATC 33277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451968497454320