Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2358 221 1e-52 seq5877 179 5e-40 seq3337 86.0 8e-12 >seq2358 Length=23655 Score = 221 bits (244), Expect = 1e-52 Identities = 1083/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 15249 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 15190 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 115676 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 15189 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 15135 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||| || || || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 15134 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 15076 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 15075 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 15016 Query 115797 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 15015 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 14958 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || | ||| || || | |||||||| || | || | || ||||||| | Sbjct 14957 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 14898 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 14897 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 14838 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGT--TCCTTGAGGGCG 116031 ||||| | || || ||| |||||||| ||||| ||| || || || ||| Sbjct 14837 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 14781 Query 116032 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 14780 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 14726 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 116141 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 14725 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 14669 Query 116142 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 14668 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 14609 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 | || | | || |||||| | || | || || ||||||| ||||| Sbjct 14608 CACGAGCTTGCGGGCTCTCGAACGCGT-AGTTCATGAGGATGAACGCATCCGCCAGACCC 14550 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGG 116318 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | || Sbjct 14549 TGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAGG 14491 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 |||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 14490 ATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATA 14431 Query 116379 AAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 || | | ||| || || || || | ||| ||| || |||| || || | | Sbjct 14430 CAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACAG 14378 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 |||||| || ||||| | |||||| |||||||| || | ||| || | Sbjct 14377 ACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATA 14318 Query 116498 AATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | || |||| || || |||||||||| || || ||||| |||| || | Sbjct 14317 AGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGT 14261 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 14260 CCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA-- 14203 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | || | | | || | | || | | || |||| |||||||||| || || Sbjct 14202 CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAG 14143 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 || |||||||| || ||| |||| ||| | || || || || | | |||||||| | Sbjct 14142 AGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 14084 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 14083 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 14024 Query 116792 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 14023 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 13965 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGA 116907 || | | || ||||||||||| |||| ||| | |||| || |||||||| || Sbjct 13964 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 13905 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| ||||| | ||||| ||||||| || || | ||| || || || || Sbjct 13904 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 13845 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 | ||| ||| || || || || || || |||| | || | ||| || Sbjct 13844 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 13785 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 13784 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 13725 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || |||||| ||| | || | |||||||| |||| || || | ||| Sbjct 13724 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGC 13665 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 117206 || || ||||||||||| || || || ||||| |||| | || | || ||||| || Sbjct 13664 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 13606 Query 117207 GTAGGTCTCCA 117217 ||| ||||||| Sbjct 13605 GTACGTCTCCA 13595 >seq5877 Length=64605 Score = 179 bits (198), Expect = 5e-40 Identities = 400/588 (68%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | Sbjct 9661 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 9720 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 9721 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 9780 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 9781 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 9840 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | ||| | | |||||| ||||||| || || | || Sbjct 9841 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 9899 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-- 127520 | |||| | | | | || ||| | | | | || |||| |||| | | || Sbjct 9900 TCTCGTGTACACGGCTCTCCGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 9953 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 | || || ||| | ||||||||||| |||||| || |||||||||| ||||| Sbjct 9954 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 10013 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | ||| || || | || || ||||| |||||||||| Sbjct 10014 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 10073 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 | || |||||| ||||| || | || ||||| | ||||| | || | || Sbjct 10074 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 10132 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 10133 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 10192 Query 127757 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 10193 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 10239 >seq3337 Length=105003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 176798 GCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCA 176857 || || || |||||| | || || || |||||||| |||||||| || || || ||| Sbjct 20253 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 20312 Query 176858 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 176909 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 20313 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 20364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460097984720