Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2358 165 1e-35 seq343 84.2 3e-11 >seq2358 Length=23655 Score = 165 bits (182), Expect = 1e-35 Identities = 416/621 (67%), Gaps = 21/621 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| || |||| |||| || | | | || |||||||| Sbjct 15297 CTTGTCCACAGTGAACTGGATAGCGT---CGGCTTTCGGACGTCCGCGCATGTAGTACAT 15241 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | ||||||||| | ||| || || | | Sbjct 15240 GCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGT 15181 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||||| ||||| || ||| ||| ||| |||| || || | Sbjct 15180 CGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAG-CGCCACGGTCAG 15122 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | || | ||||||| |||||||||||||||||| || || | Sbjct 15121 CCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAA 15062 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | || | || | || | ||| | |||||| || || | ||| || Sbjct 15061 CATCATCCGGAATGTCCT-TGACCTTCTGCACCGAGCCACCATCATTCA-GAATCTGAT- 15005 Query 204134 CTCGT--CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 ||| ||| | ||| ||||| | | ||| |||||| || ||| | ||| | Sbjct 15004 TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAA 14945 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | || ||| | ||| || ||| |||| ||| | || |||| Sbjct 14944 CGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGA 14885 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||||| ||| ||| || |||||||| || | |||| Sbjct 14884 TAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCA 14825 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||| || | ||||| ||| ||| || || | || ||||| | || | Sbjct 14824 GCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGT--TCCAAAG 14767 Query 204372 CACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 | | | ||| | |||||||||||||||||||| ||||| || | |||| | || Sbjct 14766 CCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 14707 Query 204427 GCCCTTGTACGTCGGATAAGG 204447 ||||| | ||||| ||||| Sbjct 14706 GCCCTGGAACGTCTCGTAAGG 14686 >seq343 Length=80906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 116091 TTATCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTT 116150 |||||||||| | | ||||| |||| || |||||||| | || || || || ||| || Sbjct 73868 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 73927 Query 116151 GCGAGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAA 116210 || ||||||||||| ||||| | | | ||||| || ||| || || || || Sbjct 73928 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 73987 Query 116211 TTGATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG 116256 || || ||| ||| || ||||| ||| | ||| |||||||||| Sbjct 73988 TTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCATGTGG 74033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795094151959520