Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1672 141 2e-28 seq4565 138 3e-27 seq759 138 3e-27 seq2652 120 7e-22 seq4505 98.7 2e-15 seq2358 96.9 8e-15 seq1517 95.1 3e-14 >seq1672 Length=23672 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| ||||| |||||||| |||| ||||||||| || || Sbjct 22332 CGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 22391 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| |||||||||||||| || ||| ||| Sbjct 22392 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 22451 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| |||| | ||| | | || || |||| | Sbjct 22452 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 22511 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || ||||| || || || Sbjct 22512 GTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG 22549 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || ||||||||||| |||||||| |||| ||||||||| || || Sbjct 22559 TCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 22618 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| || |||||||| |||||||||||||| || ||| || Sbjct 22619 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCC 22678 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||||| ||| |||| | ||| | | || || || | Sbjct 22679 TTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 22738 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || ||||| || || || Sbjct 22739 GGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTG 22777 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| ||||| |||||||| |||| |||||| || || || Sbjct 22104 CGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTG 22163 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| |||||||||||||| || ||| ||| Sbjct 22164 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 22223 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| |||| | ||| | | || || || | Sbjct 22224 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGG 22283 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || ||||| || || || Sbjct 22284 GTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTG 22321 Score = 120 bits (132), Expect = 7e-22 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| ||||| |||||||| |||| ||||||||| || || Sbjct 22788 CGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 22847 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| | |||||||||||| || || ||| Sbjct 22848 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCT 22907 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| |||| | ||| | | || || || | Sbjct 22908 TCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTCCACGTCNAGN 22967 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || ||||| || || || Sbjct 22968 GTNATNGTCTTGCCGGTCAANGTCTTCACGAAGATCTG 23005 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| ||||| |||||||| |||| |||||| || || || Sbjct 23016 CGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTG 23075 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| |||||||||||||| || ||| ||| Sbjct 23076 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 23135 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| |||| | ||| | | || || || | Sbjct 23136 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGG 23195 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || ||||| || || || Sbjct 23196 GTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTG 23233 >seq4565 Length=138104 Score = 138 bits (152), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| | || ||| Sbjct 117995 CGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTG 118054 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| |||||||||||||| || ||||| Sbjct 118055 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCC 118114 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||| || || | | |||| | | || || || | | Sbjct 118115 TCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGC 118174 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| ||||| || || || || ||||| || |||||| Sbjct 118175 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTG---CATTTT 118218 >seq759 Length=119387 Score = 138 bits (152), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| |||||||||| || || Sbjct 32108 CGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTG 32167 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| | |||||||||||| || || ||| Sbjct 32168 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCT 32227 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| |||| | ||| | | || || |||| | Sbjct 32228 TCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGC 32287 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || ||||| || || || Sbjct 32288 GTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG 32325 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || |||||||| || |||||||| |||| |||||||||| || || Sbjct 32791 TCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGT 32850 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| || |||||||| | |||||||||||| || || || Sbjct 32851 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 32910 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||||||||| ||| |||| | ||| | | || || |||| Sbjct 32911 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 32970 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||| || || | || ||||| || || || Sbjct 32971 CGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG 33009 Score = 136 bits (150), Expect = 9e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || |||||||| || |||||||| |||| ||||||||| || || Sbjct 32335 TCGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNCTCAGCGT 32394 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| || |||||||| | |||||||||||| || || || Sbjct 32395 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 32454 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||||||||| ||| |||| | ||| | | || || |||| Sbjct 32455 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 32514 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||| || || | || ||||| || || || Sbjct 32515 CGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG 32553 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || |||||||| || |||||||| |||| ||||||||| || || Sbjct 32563 TCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 32622 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| || |||||||| | |||||||||||| || || || Sbjct 32623 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 32682 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||||||||| ||| |||| | ||| | | || || |||| Sbjct 32683 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 32742 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||| || || | || ||||| || || || Sbjct 32743 CGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG 32781 >seq2652 Length=38300 Score = 120 bits (132), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| ||||| |||||||| |||| |||||| || || || Sbjct 33056 CGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTG 33115 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| |||||||||||||| || ||| ||| Sbjct 33116 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 33175 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| ||| | ||| | | || || || | Sbjct 33176 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACGTCGAGG 33235 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || ||||| || || || Sbjct 33236 GTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTG 33273 >seq4505 Length=81093 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 71142 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || || | |||||| ||||| ||||| | || ||||||| Sbjct 71141 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 71082 Query 199620 AAATTTG 199626 | || || Sbjct 71081 AGATCTG 71075 >seq2358 Length=23655 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 14264 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 14205 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 14204 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 14145 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 14144 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 14085 Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 168007 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 14084 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 14025 Query 168008 TAGAACAA 168015 || ||||| Sbjct 14024 TAAAACAA 14017 >seq1517 Length=75306 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 72493 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 72434 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 72433 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 72374 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || || | |||||| ||||| ||||| | || ||||||| Sbjct 72373 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 72314 Query 199620 AAATTTG 199626 | || || Sbjct 72313 AGATCTG 72307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178828825501514