Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2358 248 1e-60 seq5877 111 2e-19 seq4836 100 4e-16 seq3337 98.7 1e-15 seq6109 96.9 4e-15 >seq2358 Length=23655 Score = 248 bits (274), Expect = 1e-60 Identities = 1078/1676 (64%), Gaps = 42/1676 (3%) Strand=Plus/Plus Query 111673 TGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | || | |||| ||||| || || || |||||| Sbjct 13595 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 13653 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || ||| | || || |||| ||| ||||| | || | |||| || Sbjct 13654 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGAC 13713 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | |||||||||| ||| || | |||| ||| ||||| || ||||| || Sbjct 13714 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 13773 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || || | || | |||| || || | || || || Sbjct 13774 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAAC 13833 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 13834 GGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTG 13893 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | || || |||||||| || |||| |||| | ||||| |||||||| Sbjct 13894 GACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCC 13953 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 || | | |||||||| || ||||| ||||| ||| ||||| | || |||| Sbjct 13954 GACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGC 14013 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | || | ||| || ||| | || |||||||||||||||||||| |||| | |||| Sbjct 14014 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGC 14073 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGA 112207 || ||| | | || ||||| || | || || ||||| | ||| ||| | ||| || || Sbjct 14074 AAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATGA 14132 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267 ||||||||| || || |||||||||| | ||| | || ||| | ||| | || Sbjct 14133 GTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACGC 14192 Query 112268 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 14193 TCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCT 14252 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 ||||| ||||| ||||| ||| || || |||| |||||| |||| |||| Sbjct 14253 CTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC---CGTTC 14309 Query 112388 ---CAACCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGTA 112443 |||| | || ||| || |||| | || | || |||||| ||| ||||| | Sbjct 14310 CAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGCA 14368 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 || | || || | || || || | || |||||| | || | || || || Sbjct 14369 ACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTACA 14422 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 | | ||| | || || || |||| ||||| |||| || || || | Sbjct 14423 AGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTCA 14482 Query 112564 ATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 14483 ACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTATT 14541 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || ||||| ||||| ||||||| ||||| || | |||| || || | || Sbjct 14542 GGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCAA 14601 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGT 112742 || ||| | || | || || ||||| || || || || | ||| || Sbjct 14602 GCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTCG 14661 Query 112743 TCGGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 112799 |||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 14662 ATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CAG 14717 Query 112800 CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--ACT 112854 ||||| ||| || || || ||||||| || | ||| | || || | ||| Sbjct 14718 TAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAACT 14776 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| ||| || || || | ||| | | ||||| |||||| || || | |||| Sbjct 14777 GGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCAC 14836 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| ||||||||||| || || ||| |||| || || || | | || || |||| Sbjct 14837 CCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTACA 14896 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 || | ||||| || | | | || || ||||| ||| || |||||| ||| Sbjct 14897 CGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATCGTTAACAAGTATC 14956 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGGT 113092 | || | || || | ||| | || | ||| | ||| || | | ||| || | Sbjct 14957 TGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTCT 15014 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 ||| | ||||| || | || || | ||| ||||| ||||| ||||| || ||| Sbjct 15015 GAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGTA 15074 Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 | || || ||||| |||||| ||||| ||| | ||| || | || || ||||| || Sbjct 15075 CAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-CG 15133 Query 113213 CTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 ||| || || ||||| |||| | ||| | || || || |||| Sbjct 15134 CTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAGC 15193 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 15194 TGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 15249 >seq5877 Length=64605 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 10107 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 10048 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 10047 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 9988 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 9987 AGTCGTGACGAGGG 9974 >seq4836 Length=35686 Score = 100 bits (110), Expect = 4e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 11190 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 11133 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 11132 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 11073 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 11072 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 11013 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 11012 TACCAGGC 11005 >seq3337 Length=105003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||||| ||| | ||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 20238 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 20297 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || ||||| ||||| || | || || || || || || | ||||| ||||||||| Sbjct 20298 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 20357 Query 176996 TCTGTCA 177002 || |||| Sbjct 20358 TCCGTCA 20364 >seq6109 Length=29660 Score = 96.9 bits (106), Expect = 4e-15 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| |||||| | |||| | |||||||||||||| ||| |||| ||| Sbjct 12289 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 12230 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCG-GAAACATCTTGATAGTCCT 176819 ||| | ||||||||| | | ||||| || |||| | | | | || | || | || Sbjct 12229 TGATCTGCCATGATCATCAAGTGGCCATAACGCAAGCCCTTGGTAGA-CTCG-TACTTCT 12172 Query 176820 TACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCT 176879 || | | ||||| | ||||| | || | || ||| | ||| || || Sbjct 12171 GGCCGTACTTGAGACCAAGAATCTTGACCACATTCTGGATCTCGTCGTTCTTCAGGATCT 12112 Query 176880 GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 176939 ||| | ||| |||||||| || ||| || | | ||||||||||| |||| Sbjct 12111 GTGAGTGGCTGGCTTCACGAACGTTGAGCATCTTACCTCTCAACGGGAAGACACCATAGT 12052 Query 176940 GATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTG 176999 ||| | ||||| |||| |||||| | || || | ||| || || ||||| ||||| | Sbjct 12051 AATCTCTGCCAACAACAGCGAGACCGCCCACGGCAACCGTCTTGGCGGAATCTCCCTCCG 11992 Query 177000 TCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | | ||| || || || ||||| | || ||||| || | ||| ||||| |||| Sbjct 11991 TAAGGATCAGAGTGCAGTCCTTGC---TCTTCGCGGTACCAGCGTGGTTGGCATCGTCCA 11935 Query 177057 ATTTGGGAATACCAGT 177072 |||||| |||||||| Sbjct 11934 GTTTGGGGATACCAGT 11919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620694742502240