Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2358 250 3e-61 seq3067 152 6e-32 seq4836 123 3e-23 seq5877 102 1e-16 seq6109 87.8 2e-12 >seq2358 Length=23655 Score = 250 bits (276), Expect = 3e-61 Identities = 1086/1691 (64%), Gaps = 54/1691 (3%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | || || Sbjct 15248 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTA 15189 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| ||||||| ||| ||| || || || Sbjct 15188 CTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCG-CC 15130 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || ||| | | | ||| || | || ||||| || ||||||||| Sbjct 15129 ACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 15070 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||| | |||||| ||||||||| || || || | ||||||||| | |||| || Sbjct 15069 CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAAT 15010 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 ||| | || || ||| | |||| || | || || | | |||| ||| Sbjct 15009 CTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTT 14950 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 ||| || | || |||||||| | || ||| ||| ||||| | |||||| || Sbjct 14949 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 14890 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 |||| | |||| |||||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 14889 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 14830 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || || ||| |||||||| | | | || || | |||| |||| | | Sbjct 14829 CAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGTTCCA 14770 Query 109893 ACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | | ||| || || | | || ||||||| || || | | ||||| | | Sbjct 14769 AAGCCCAG---ATGAAGGTGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTACTGG 14714 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | ||||| |||| ||| ||||||| | ||| || ||| | ||| || | || Sbjct 14713 CCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATCGACGTCT 14654 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATAT----GAGCA-TTCATGAG---GCGAGA 110063 | | || ||| || || ||||| || || | | || |||| ||| ||| | Sbjct 14653 CCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGG- 14595 Query 110064 CTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 |||| |||| | | || || | || | ||| ||||||| |||||||| || | Sbjct 14594 CTCT-------CGAACGCGTAGTTCATGAGGA-TGAACGCATCCGCCAGACCCTGGACGC 14543 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 | | ||||||||| ||||| |||||| || ||||| | | || || ||| ||| Sbjct 14542 CAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGT 14483 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 || |||||||||| ||||| || ||| | ||| | |||| ||| | | Sbjct 14482 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 14423 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGA 110301 ||| |||||| | || | || ||| | | || || || | |||||| | Sbjct 14422 TGTAGTCGAACA-------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAG 14370 Query 110302 TTGCACACAGAAGTCTCGTCTT-TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG-- 110358 |||||||| | ||| || || || |||| |||| | ||| || |||||| Sbjct 14369 TTGCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCT 14311 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 |||| | | ||||||||||| ||| ||||| ||| ||| ||| ||||| || Sbjct 14310 GGAACGGATCGT---ACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTA 14254 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||||| | || || || || |||| | | || || || ||| || | || Sbjct 14253 GAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA--CAGCTGC 14196 Query 110478 GGCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 | | | | ||| ||| || | ||||||| ||||||||| |||| | || Sbjct 14195 TGAGCGTTGA-TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTC 14137 Query 110535 AAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 ||| || | || | ||| || | ||||| || | || ||||||||| | || Sbjct 14136 AAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCC 14078 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | || ||| |||| || ||||||||||| || ||||| | ||||| ||| | || | Sbjct 14077 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 14018 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 ||| ||| || | |||| ||| ||||| || || |||| || || | | Sbjct 14017 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 13958 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-T 110770 || | |||||| || || | |||| ||||| || ||||| || ||| |||| | Sbjct 13957 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 13898 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 ||| |||||||| || ||| | || || || | | ||| || ||||| || | || Sbjct 13897 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGG 13838 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 || || || || | || | ||| |||| || |||| ||| ||| ||||| | Sbjct 13837 AGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGA 13778 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| |||||||| ||| || || || | | || || | ||||| || |||| Sbjct 13777 TACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAA 13718 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || || ||| | || | ||| ||||||||||||| ||||||||| ||||| || | Sbjct 13717 TAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGG 13658 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTG 111069 | |||||||| ||||| || || || |||| | || | || ||||| | ||| || Sbjct 13657 CGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTC 13599 Query 111070 TCGAGTGCGGA 111080 || |||||||| Sbjct 13598 TCCAGTGCGGA 13588 >seq3067 Length=47956 Score = 152 bits (168), Expect = 6e-32 Identities = 292/424 (69%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || |||||||| | ||||| Sbjct 4663 ATCTGCCGGTCGAATCGACCGGGACGAAGGATAGCCTTGTCTAGAATATCAGCTCGGTTC 4604 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| || |||| | || ||| || ||||| || || Sbjct 4603 GTACCAGCGAGCACCACAACACC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 4547 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 |||||||| | || | ||||||||||||||| ||| | || ||| || Sbjct 4546 AGCTGGTTCAGAGTATTCTCACGCTCATCGTTGCCACCCGAGAAGTTTCCTT-TGCTTCG 4488 Query 11666 A--ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 | |||| | ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 4487 AGCACGCGCC------ACAGCATCAATCTCATCGATGAACACGATGCACGGAGCATTGGC 4434 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||| |||| | ||| || ||||| ||||| || || ||||| |||||||| |||| Sbjct 4433 ACGAGCCTCCTTGAACAGGTCACGCACACGAGACGGACCCACACCGACGAACATTTCAAT 4374 Query 11784 GAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | | | || ||||| ||| || || | | ||||||||| |||| || Sbjct 4373 GAAATCCGAGCCGGAAATGCTGAA-GAACGGGACGCTGGCCTCACCAGCTGTGGCCTTAG 4315 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | | || |||||||||||||| |||| ||| | || || || || ||||||||||| Sbjct 4314 CCAACAGCGTCTTACCCGTACCGGGTGGGCCAACAAGCAGAGCACCCTTGGGGATCTTGG 4255 Query 11903 CACC 11906 |||| Sbjct 4254 CACC 4251 >seq4836 Length=35686 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| | ||| |||||| || | | || | | || Sbjct 11196 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTC-CGCTTGGCCGACTC 11138 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||||||| ||||||| |||| | || | Sbjct 11137 GAAGAGGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCC 11078 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || || |||||||||||| || |||||||| || ||||| Sbjct 11077 AGAAGAATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTT 11018 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||||||| | |||| Sbjct 11017 ACCCGTACCAGGCGGGCCAG 10998 >seq5877 Length=64605 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| || || |||||||| || | ||| Sbjct 9974 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 10033 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 |||||||||||||||| || ||| || || ||||||||||| |||||| |||||| Sbjct 10034 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 10093 Query 119634 GCGAATAGACGCTC--AGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | | ||| | | | |||| |||||||||| ||||||| Sbjct 10094 GCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGA 10153 Query 119691 GCCTT 119695 ||||| Sbjct 10154 GCCTT 10158 >seq6109 Length=29660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| | | || || || ||||| | |||||| || || || | |||||| | || Sbjct 12080 CTTACCTCTCAACGGGAAGACACCATAGTAATCTCTGCCAACAACAGCGAGACCGCCCAC 12021 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 || | || || || ||||| ||||| || | ||| || || || | || || | Sbjct 12020 GGCAACCGTCTTGGCGGAATCTCCCTCCGTAAGGATCAGAGTGCAGT--CCTTGCTCTTC 11963 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 || |||||||| | ||| |||||||||| ||||||||||||||||| Sbjct 11962 GCGGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCAGTGA 11917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588930781367600