Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4505 102 5e-17 seq1672 102 5e-17 seq1517 102 5e-17 seq4565 100 2e-16 seq2652 93.3 3e-14 >seq4505 Length=81093 Score = 102 bits (112), Expect = 5e-17 Identities = 144/197 (73%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 71259 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 71200 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| |||| | ||||||||||| || ||||| ||||| || | Sbjct 71199 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT--T 71144 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | ||| || |||| || ||||| || ||||| | |||||||| Sbjct 71143 GTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCAC 71084 Query 34970 AAAGATCTGCAT-ATTC 34985 |||||||||||| |||| Sbjct 71083 AAAGATCTGCATGATTC 71067 >seq1672 Length=23672 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 22590 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 22649 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||||||| |||||| Sbjct 22650 ATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTG 22709 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| ||| ||||| || || || | |||||||| Sbjct 22710 TCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACG 22769 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22770 AAGATCTGCAT 22780 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| || || ||| | || | || || Sbjct 23028 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 23087 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | || |||||||| | Sbjct 23088 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 23147 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | ||||| || | ||| || |||| ||| ||||| || Sbjct 23148 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTG 23207 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || | |||||||| ||||||||||| ||| Sbjct 23208 CCGGTCAACGTCTTCACGAAGATCTGCATCTTC 23240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| || || ||| | || | || || Sbjct 22116 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 22175 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | || |||||||| | Sbjct 22176 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 22235 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | ||||| || | ||| || |||| ||| ||||| || Sbjct 22236 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTG 22295 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||| ||||||||||| Sbjct 22296 CCGGTCAACGTCTTCACGAAGATCTGCAT 22324 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| ||| | || | || || Sbjct 22344 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCG 22403 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | || |||||||| | Sbjct 22404 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 22463 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | ||||| || | ||| || || | || || || || Sbjct 22464 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 22523 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||||| |||||||||||| Sbjct 22524 CCGGTCAAGGTCTTCACGAAGATCTGCATA 22553 >seq1517 Length=75306 Score = 102 bits (112), Expect = 5e-17 Identities = 144/197 (73%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 72491 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 72432 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| |||| | ||||||||||| || ||||| ||||| || | Sbjct 72431 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT--T 72376 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | ||| || |||| || ||||| || ||||| | |||||||| Sbjct 72375 GTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCAC 72316 Query 34970 AAAGATCTGCAT-ATTC 34985 |||||||||||| |||| Sbjct 72315 AAAGATCTGCATGATTC 72299 >seq4565 Length=138104 Score = 100 bits (110), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| || | || | || || ||||| || ||||| || Sbjct 118025 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 118084 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||| ||||| ||||| || Sbjct 118085 ATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGAC--AT 118142 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | ||| || |||| || ||||| || ||||| || ||||| Sbjct 118143 --TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTT 118200 Query 34967 CACAAAGATCTGCATATTC 34985 || || |||||||| ||| Sbjct 118201 GACGAAAATCTGCATTTTC 118219 >seq2652 Length=38300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| || || ||| | || | || || Sbjct 33068 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 33127 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | || |||||||| | Sbjct 33128 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 33187 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | |||| || | ||| || |||| ||| ||||| || Sbjct 33188 ATCTTCTGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTG 33247 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || | |||||||| ||||||||||| ||| Sbjct 33248 CCGGTCAACGTCTTCACGAAGATCTGCATCTTC 33280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324609299348976