Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq343 161 8e-35 >seq343 Length=80906 Score = 161 bits (178), Expect = 8e-35 Identities = 403/604 (67%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| || |||||||| || | |||||| ||||| ||||| || | |||| Sbjct 74052 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 73993 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29908 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 73992 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 73935 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 73934 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 73875 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| | || |||| | ||||| ||||| || | ||||||| || || || |||| Sbjct 73874 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 73815 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | | || |||||||| || ||| | || || | ||| || || Sbjct 73814 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 73755 Query 30089 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 73754 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 73699 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 73698 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 73639 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30264 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 73638 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 73579 Query 30265 GCGTCCCAGATCTTTACCCCCTTCT--CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||| || | | | |||| | |||| | || ||||| || || | Sbjct 73578 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAG--TGTGGGCACTTGTGTCTCCACTAA 73521 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30382 |||||||| |||||||| | || | ||| || |||| |||||||| || | | Sbjct 73520 TAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAATG 73461 Query 30383 GAAA 30386 |||| Sbjct 73460 GAAA 73457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408587012674166