Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1672 113 4e-20 seq759 109 4e-19 seq2652 102 6e-17 >seq1672 Length=23672 Score = 113 bits (124), Expect = 4e-20 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||| ||| | || | | | || |||| ||| Sbjct 22806 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 22865 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || ||||| |||||||| || || || || ||| Sbjct 22866 TTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTT 22925 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || || | || |||||||| Sbjct 22926 TGCTTGACGTTGTCGATCGAGTCCGANGGCTCCACGTCNAGNGTNATNGTCTTGCCGGTC 22985 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 22986 AANGTCTTCACGAAGATCTGCATG 23009 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||||||| | || | | || || | ||| Sbjct 22122 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGC 22181 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || |||||||||||||| || || ||||| || Sbjct 22182 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 22241 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || || | || |||||||| Sbjct 22242 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 22301 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 22302 AACGTCTTCACGAAGATCTGCATG 22325 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||| ||| | || | | || || | ||| Sbjct 22350 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGC 22409 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || |||||||||||||| || || ||||| || Sbjct 22410 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 22469 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| |||||||| Sbjct 22470 TGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 22529 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 22530 AAGGTCTTCACGAAGATCTGCAT 22552 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||||||| | || | | || || | ||| Sbjct 23034 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGC 23093 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || |||||||||||||| || || ||||| || Sbjct 23094 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 23153 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || || | || |||||||| Sbjct 23154 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 23213 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 23214 AACGTCTTCACGAAGATCTGCAT 23236 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| ||| | || | | || || | ||| Sbjct 22578 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGC 22637 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || |||||||||||||| || || ||||| || Sbjct 22638 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 22697 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| |||| ||||| || || || | || |||||||| Sbjct 22698 TGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 22757 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 22758 AACGTCTTCACGAAGATCTGCATG 22781 >seq759 Length=119387 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| ||| | || | | | || |||| ||| Sbjct 32582 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGC 32641 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || ||||| |||||||| || || || || ||| Sbjct 32642 TTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTT 32701 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| |||||||| Sbjct 32702 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 32761 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 32762 AAGGTCTTCACGAAGATCTGCAT 32784 Score = 107 bits (118), Expect = 2e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| || | || | | | || |||| ||| Sbjct 32354 TGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNCTCAGCGTGCGGCCGTCCTCCAGCTGC 32413 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || ||||| |||||||| || || || || ||| Sbjct 32414 TTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTT 32473 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| |||||||| Sbjct 32474 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 32533 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 32534 AAGGTCTTCACGAAGATCTGCAT 32556 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| || | || | | | || |||| ||| Sbjct 32126 TGGAGNGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGC 32185 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || ||||| |||||||| || || || || ||| Sbjct 32186 TTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTT 32245 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| |||||||| Sbjct 32246 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 32305 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 32306 AAGGTCTTCACGAAGATCTGCAT 32328 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| || | || | | | || |||| ||| Sbjct 32810 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGC 32869 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || ||||| |||||||| || || || || ||| Sbjct 32870 TTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTT 32929 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | | ||| || | ||||| || || |||| ||| |||||||| Sbjct 32930 TGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTC 32989 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 32990 AAGGTCTTCACGAAGATCTGCAT 33012 >seq2652 Length=38300 Score = 102 bits (112), Expect = 6e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||||||| | || | | || || | ||| Sbjct 33074 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGC 33133 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || |||||||||||||| || || ||||| || Sbjct 33134 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 33193 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||| |||| ||||| || || || | || |||||||| Sbjct 33194 TGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 33253 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 33254 AACGTCTTCACGAAGATCTGCAT 33276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396248736332694