Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2358 242 7e-59 seq5877 201 2e-46 >seq2358 Length=23655 Score = 242 bits (268), Expect = 7e-59 Identities = 715/1087 (66%), Gaps = 44/1087 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | | ||| | | | ||| | ||| || ||||| || Sbjct 14949 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 14890 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| ||||| ||||| || ||| |||||| |||||||| || || Sbjct 14889 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 14830 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA--AGCTCTGCCCAGTC 213085 ||| || ||| | | ||||| | |||| | | | || | ||||||| Sbjct 14829 CAGCAGCGAGTTACGGAGACCGTGTTTA---ATGACGTCATCTTTTAGTGCGGCCCAGTT 14773 Query 213086 CCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||| ||||| |||| | ||| ||||||||| ||||| ||||| || Sbjct 14772 CCAAAGCCCAGATGAAGGTG--------TGACGCCCCACATGTCGAACTGGAAGATACCC 14721 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || || | || ||||||| | | ||| || || ||| |||| | ||| Sbjct 14720 TTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATC 14661 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GC 213262 |||| || || |||||| ||||||| || || || || | | |||| | ||| | || Sbjct 14660 GACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAA-TTCACGAGC 14602 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | ||| | ||| | ||||| | |||| |||| ||||| |||||||| || Sbjct 14601 TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 14542 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| |||||| |||| ||| | | || ||| ||| Sbjct 14541 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 14483 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| ||| ||| || | ||| || Sbjct 14482 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 14423 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || | |||||| |||| | ||||||| |||||| || | |||| || Sbjct 14422 TGTAGTCGAACACA------CCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGT 14369 Query 213502 TGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||| || |||||||| | | | | | ||||||||||||| ||| ||| | ||||||| Sbjct 14368 TGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATGACTTCGCAGCATAAGTTGCTG 14310 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | ||||| || |||| |||||| ||||| ||||| ||| || | |||||||||||| Sbjct 14309 GAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGC 14250 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| |||| || ||||| | ||| | | || || | ||| || | | || Sbjct 14249 ATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCG 14190 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 |||| | || || || | | | | | |||||||| ||| || || | | | Sbjct 14189 TTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAA 14135 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCC 213795 | || | ||||||| | || ||| || ||| | | | |||||| | | |||| Sbjct 14134 ACTCATCGCCCCAGCACTCGTACAGACCAGGA---GCTTCGTTGGGACAGAACAAACTCC 14078 Query 213796 AGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 | | || | | ||||||| |||||| || || || |||||||||||| |||| Sbjct 14077 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 14018 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 ||| | || | | || || ||| || |||||||| || || || || | Sbjct 14017 AGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 13958 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCT 213972 ||| |||||||||||||||| |||||| || || | |||| | ||| ||||||| Sbjct 13957 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 13898 Query 213973 GGTCCAC 213979 ||||||| Sbjct 13897 GGTCCAC 13891 >seq5877 Length=64605 Score = 201 bits (222), Expect = 2e-46 Identities = 483/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 9779 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 9838 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 9839 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 9898 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||| | | ||| || ||| ||||| || | | |||| Sbjct 9899 ATCTCGTGTACACGGCTCTCCGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 9955 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 9956 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 10015 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 10016 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 10075 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 || ||||| || ||||| || || | ||| | | || || | | | | | Sbjct 10076 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTC-CGGGTAGGAGGATACACGCGGGTCGCA 10134 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || | Sbjct 10135 CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAG 10194 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | ||| |||||| | || || | ||||||| || ||| | Sbjct 10195 GAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGAC 10251 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| ||| Sbjct 10252 CTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCAC 10311 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || || ||||| || || || || || || || Sbjct 10312 CTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGC 10371 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| || |||||||||| ||||| ||||| | Sbjct 10372 GAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTC 10431 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | ||||| | || || | ||||||||||| || ||||| || Sbjct 10432 CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 10491 Query 48670 GTACAT 48675 |||||| Sbjct 10492 GTACAT 10497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931461281569280