Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5877 179 7e-40 seq2358 174 3e-38 >seq5877 Length=64605 Score = 179 bits (198), Expect = 7e-40 Identities = 551/848 (65%), Gaps = 21/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| || | ||| |||||| || || ||| | || || | Sbjct 10503 TGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTG 10444 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| | || | | |||||| || || ||||| ||||| Sbjct 10443 CACGACCTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACACTTCATCAAGCACGTG 10384 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| |||||| ||| ||||| ||||||||||| || | || |||| | Sbjct 10383 CTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGC 10324 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||||||||| ||| ||||| || ||||| || |||||||| ||||| || Sbjct 10323 AACGAAGTGCAG---GTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAG 10267 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||||| || | ||| | |||||||| | |||| |||| Sbjct 10266 AACATTCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAG 10207 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | || | ||||||| ||| ||| || | ||| || |||||| | ||| Sbjct 10206 AAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGG 10147 Query 25837 GCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | || || | || | | ||||| ||| | || || || Sbjct 10146 GCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACCCG-GAGCGCCTGCTGGCTTTCGC 10088 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||||||||| |||||||| ||| || || || ||| ||||||| ||||| ||| || Sbjct 10087 TGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGC 10029 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||||||| ||| ||| || |||||||||||||| | |||||||| | | Sbjct 10028 GCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGC 9969 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || |||||||| | ||| | | | || | ||| || || | |||| Sbjct 9968 ACACGGACTTCGCCTGCCTTTTGTACTC---CAAGCTGGT-CACCAAGCTGCCGGAGAG- 9914 Query 26075 CCGTCTACA--GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 |||| |||| ||||| || ||||||| ||| ||| | |||||| Sbjct 9913 CCGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTC 9854 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | || |||||| |||||| |||| |||||||||| || Sbjct 9853 GCTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGT 9794 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCG 26250 ||| |||| |||||| | | ||| || | ||| ||||| |||| ||||| Sbjct 9793 GGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTAC--CACGCTAAGAACCCT 9736 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 || |||| ||||| | || || | |||| ||||||||||| || || ||| | || Sbjct 9735 TTTGACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTG 9676 Query 26311 GGCGACTA 26318 ||||| || Sbjct 9675 GGCGAGTA 9668 >seq2358 Length=23655 Score = 174 bits (192), Expect = 3e-38 Identities = 645/1001 (64%), Gaps = 51/1001 (5%) Strand=Plus/Minus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCT 221569 || ||||| ||||| || || ||||| ||||| | || | | ||||||| | || Sbjct 14561 TCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC 14502 Query 221570 TCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTA 221629 |||| || |||||| ||||||||||||| | ||||||||||| | ||||| || || Sbjct 14501 TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTG 14442 Query 221630 ACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCC 221689 |||||||| ||| ||| || | ||||| | |||| |||| Sbjct 14441 ACCACCTCATACAGTCTCTTGTAGTCGAACA---------CACCGT---------TTTCC 14400 Query 221690 ACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--G 221747 ||||| || || || |||| ||| ||||| |||||||| || | || | Sbjct 14399 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATC--GGGTGACG 14342 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| |||| || || | ||||||| | ||| || |||| || | || | Sbjct 14341 TGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGT 14282 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| || || ||||||||||||||||| ||||| | || ||||| | ||||| Sbjct 14281 TCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAG 14222 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCT-CTTG-----ACTGCA 221920 | | || || | ||| || | ||| ||| | | ||| | | | || | Sbjct 14221 CGTCTAGGATAGCGAACCACAGCT-GCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCC 14163 Query 221921 CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCC 221980 |||| |||||||||| ||||| ||||||| || || | ||||| | Sbjct 14162 TTCTCGTACTTTTCATAC-------AGAGC--TTCAAACTCATCGCCCCAGCACTCGTAC 14112 Query 221981 AGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTG---TTGTCTTTGACCCTC 222037 || || ||| | |||||| | || |||||| |||| ||| | | || ||| Sbjct 14111 AGACCAGGAGCTTCGTTGGGACAGAACAAACTCCA---CTTGCCATTGGCCTCCACTCTC 14055 Query 222038 TGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCC 222097 | ||||||||| || || | ||||||||| | ||| | || | || || ||| ||| Sbjct 14054 TTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCA 13995 Query 222098 ACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 |||| ||| || | |||||||| ||||| || | ||| |||||||||||||||| Sbjct 13994 TTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAG 13935 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCG 222217 |||| || | | ||| ||||| || ||||| ||||| | || || Sbjct 13934 TAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCG 13875 Query 222218 TTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTAC 222277 || || | || | | || | | ||||| || ||||| ||||| ||||| Sbjct 13874 TTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAG 13815 Query 222278 GCACCGCCGGCCCTCAGGTTACTGGCAGAC--ATGCCGATACCACCGGCGTGTTTCGAGA 222335 ||| | | ||| ||| || || |||||||| || || ||| |||| Sbjct 13814 CTGTTAGTGGCGCGGATGTT--GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGA 13757 Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395 | |||||| ||| || ||||| |||||||| |||||||| |||| | || Sbjct 13756 TACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCA 13697 Query 222396 GCAGAAAACAAGACGACATCTGA-GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTG 222454 || || ||||| |||| |||| || ||| | | |||||| || || || || || Sbjct 13696 ATAGGAAGCAAGAAGACAACTGAGGACGTGG-CGTGCCGGCGTTGAAGAGAGTAGGGGTG 13638 Query 222455 GCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||||| || ||| | | ||||| || ||||||||||| Sbjct 13637 GCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTC 13597 Score = 96.9 bits (106), Expect = 6e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| | || ||||| |||||||||||||||||||||||||||| Sbjct 14910 GTACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGA 14851 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| || ||||||||||| |||||||| ||| || || ||| Sbjct 14850 GGCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCG 14808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928773487940480