Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2358 145 9e-30 seq5877 118 1e-21 seq6109 82.4 9e-11 >seq2358 Length=23655 Score = 145 bits (160), Expect = 9e-30 Identities = 673/1047 (64%), Gaps = 31/1047 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | || | Sbjct 13534 CCGCAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCA 13593 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || ||||| Sbjct 13594 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTT 13652 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || ||| | || ||| |||| ||||||||| | || | |||| || Sbjct 13653 CAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGA 13712 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || | | | || || ||||| || ||||| || Sbjct 13713 CTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGG 13772 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || || || | | | |||| ||| | || || || || || | Sbjct 13773 CGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGA 13831 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || ||||| || ||| | || || ||||||| ||| || ||||||| Sbjct 13832 ACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATG 13891 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || |||| |||||||||| || ||||| | Sbjct 13892 TGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACG 13951 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| ||| | || | || | | | Sbjct 13952 CCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA-GCTGCACCGCGCC 14010 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || | |||| | |||||| | || || || ||||||||| | || |||| | Sbjct 14011 CGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAAT 14070 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| | | |||||||| || | || || ||||| | ||| || | ||| || Sbjct 14071 GGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGA 14129 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC--TGTA 75862 ||||||||||| || || |||||| || |||| || | || | ||| | | Sbjct 14130 TGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAA 14189 Query 75863 CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 | | || | || ||| ||||| || | | |||| ||||| ||| || | Sbjct 14190 CGCTCAGCAGCTG--TGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTC 14247 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| |||||||| || |||| ||| ||||| |||| ||||| || ||| Sbjct 14248 ATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC--- 14304 Query 75983 AGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 | || | | ||| ||| ||| | | |||||||| |||||| ||| || Sbjct 14305 CGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATGAGGTGGCAGTG 14364 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT-TTTGA 76098 ||||| ||||| || | || || || | || ||| ||| | || | || || Sbjct 14365 TGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGT---GGAAAA----CGGTGTGTTCGA 14417 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || | | ||| |||| | ||| | | || || || ||| ||||| || Sbjct 14418 CTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGA 14477 Query 76159 CAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 | || | |||||| |||| ||| || || ||||| || ||||| || | || |||| Sbjct 14478 CGTCAACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTG 14536 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || | || || || ||||| ||||||| Sbjct 14537 GTATTGGCGTCCAGGGTCTGGCGGATG 14563 >seq5877 Length=64605 Score = 118 bits (130), Expect = 1e-21 Identities = 381/577 (66%), Gaps = 16/577 (3%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||| | |||| || ||| | || | | ||||| | || Sbjct 10236 ATTGACACGTACATCAAGGACGCGATC-GAGAAGGACCATCTCCTGCGTGCCATTGAGAC 10178 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || ||| | ||||||||| | |||||| | || |||| ||| | || || Sbjct 10177 CATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATC 10118 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | |||||||| | || || || |||||| || ||||||||||| || | Sbjct 10117 -CTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 10059 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | |||| | |||||||| || |||||||| || || ||||||| | Sbjct 10058 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 9999 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | || || || || || ||||| | ||| ||| || ||| || || || | Sbjct 9998 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCC-TG--CCTTTTGTACT 9942 Query 65246 CTTTGCGTAATAGACCCA-CTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGT 65300 | || | | ||| | || ||| | | | |||| ||| | || || || Sbjct 9941 CCAAGC-TGGT-CACCAAGCTGCCGGAGAGCCGTGTACACGAGATCATTCGTGACGCTGT 9884 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACT 65359 | ||||||| | | ||| | ||| | ||||| ||| | || || |||||||||| Sbjct 9883 GGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACT 9825 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG 65419 ||| |||| | |||||||||||| ||| | || ||||| ||| | |||| | Sbjct 9824 CTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTG 9765 Query 65420 TGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 || | || | |||| ||||| || ||||||| ||||| | || || | | Sbjct 9764 TGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAG 9705 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||||||||||| || |||||||| || || || || Sbjct 9704 GCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 9668 >seq6109 Length=29660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 234/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||||||||| |||| | || || | || | ||||| ||||| || ||||| | Sbjct 12952 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13011 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || || | || || || |||| | |||| | || |||||||| || Sbjct 13012 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13071 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 || || ||| |||||| || ||||||||||| ||||||||||| || | | ||| Sbjct 13072 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGACTCGGC-CAG 13130 Query 14612 -ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGATCCTCGGGA 14670 | | || |||||||| || || || ||||| |||| |||||| ||| Sbjct 13131 TGCTCGTTATATTTTCACCAACCTAGAGCAGCTTACTCGCCGTATCTACGATCCTTTGGA 13190 Query 14671 TGACCCGAT--CCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTAC 14728 | |||| || || || || | || || || | ||||| || || || | ||| Sbjct 13191 CAA--CGATTGTCTGAAGTATCTGAATGAAGACGGCCAGTCCATCGAGCCGGAATGGTAC 13248 Query 14729 ATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || |||| | | || ||||| |||||||| || | || |||||||| ||||||| Sbjct 13249 ATCCCAATTATCCCCATGGTGCTCGTGAACGGCAGTGACGGTATCGGAACGGGTT 13303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596523798368960