Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5517 136 1e-26 seq5817 107 6e-18 seq5644 89.7 2e-12 seq5476 84.2 6e-11 seq683 84.2 6e-11 >seq5517 Length=25127 Score = 136 bits (150), Expect = 1e-26 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | | |||| | |||||| ||||| | |||||||| || || ||||| Sbjct 9056 ATCATAGCGAGTCATGACCGATTCCATTGCCTTGACAAGTCGACGCTGGATGTATCCAGT 9115 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 9116 CTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGGAAGAA 9175 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| ||| ||| | ||| | | ||| | || ||||||||||| ||||| Sbjct 9176 AAACTCTTGCGG-CGTCAAACCCTTCAGGTACGAGTTTTCCACGAAACCACGACTCTCGG 9234 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | ||| |||| | |||||||||| || | | | | ||||| ||||| | Sbjct 9235 GACCCAGGTCATCCTTGCCATAGTGTGGCAGTGTACGATGGTTGAAACCGTACGGGATTC 9294 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || |||||||||||||| |||| || | || ||||| || ||||| Sbjct 9295 GCTTACCTTCAACGTTCTGCTGACCCACACAAGCGATAATCTGGGAGATATT 9346 >seq5817 Length=58034 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || ||| ||||| || || | || || || || | || |||| Sbjct 26214 GCGATGATACCGCAGATATCGCACACGTGCACACGATACGCGTCCGAGTTGGCAAATAGT 26155 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 ||| || || |||| | | ||||| || |||| |||||| ||||||||||| || Sbjct 26154 CGATCCATGAGGAAGTTGGCCGAGCCGTGGGAGATCAGACAATCGCGCTCCATTTCTCCC 26095 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 | || |||||||| || ||||| | ||| || |||||||| || | | || | Sbjct 26094 ATTCGCAGACCACCTTCACGAGCACGACCTTCCATGGGCTGACGCGTCAACATCGTCACA 26035 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || |||||| | ||||||||||| |||||||||||||| Sbjct 26034 GGACCACGAGAACGCGAGTGGATCTTATCGTCGACCATATGCTTCAGACGCTGGTAGAAC 25975 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || |||||||| Sbjct 25974 GTGGGTCCAATGAAGAT 25958 >seq5644 Length=66598 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 22542 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 22601 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 22602 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTG 22661 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 22662 ACCACCGGACAG 22673 >seq5476 Length=5980 Score = 84.2 bits (92), Expect = 6e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 410480 TTTATGTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGG 410539 ||| || || || || ||||||||||||||| |||||||| ||||||| |||||||| Sbjct 4637 TTTGTGAGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGG 4578 Query 410540 TTCGAGTCC--CGTCGTGGGTAAttttttt 410567 ||||||||| ||||| | || ||||||| Sbjct 4577 TTCGAGTCCCGCGTCGCGTATACTTTTTTT 4548 >seq683 Length=38524 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/73 (88%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 21155 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 21213 Query 410554 T-GGGTAAttttt 410565 | | ||||||||| Sbjct 21214 TCGCGTAATTTTT 21226 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 25750 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 25692 Query 410554 T-GGGTAAtttttttAATTT 410572 | | |||||| ||| | ||| Sbjct 25691 TCGCGTAATTCTTTGATTTT 25672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471701776233854