Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5877 219 7e-51 seq420 174 2e-37 seq5974 170 3e-36 seq6116 152 8e-31 seq2358 141 1e-27 seq335 100 5e-15 >seq5877 Length=64605 Score = 219 bits (242), Expect = 7e-51 Identities = 248/329 (75%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||||| |||| || ||||||||||||||||||||| Sbjct 9974 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 10033 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||||||||||| |||||| ||||||||| |||||||| || || || || ||| Sbjct 10034 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 10093 Query 794460 GCCGACGAGCCGCTC--GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | || ||||| || | || | || || || | |||||| | ||| Sbjct 10094 GCCAGC-AGGCGCTCCGGGTAGGAGGATACACGCGG-----GTCGCACCACTTGAGTGCC 10147 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || | ||||| ||| | || | || | || || ||||| || | ||| ||||||||| Sbjct 10148 CAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTC 10207 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 |||| || |||||||| ||| ||||| ||||| || |||||| ||| ||||| ||||| Sbjct 10208 TCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTC 10267 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || |||||||||||||||||||| ||||| Sbjct 10268 TCAATGGCGATCTGGAAGCCATAGAAGCA 10296 Score = 176 bits (194), Expect = 7e-38 Identities = 230/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| Sbjct 9653 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 9712 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | ||||| ||| ||| || || Sbjct 9713 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGA-CACACCAAG 9771 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| ||||| ||||| || ||||| ||||||||||||||||||||||| | |||||| Sbjct 9772 CGAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCAT 9831 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || || ||| |||| || ||||| || | |||||||| | ||| ||| | || || || Sbjct 9832 ACCAATCAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 9891 Query 794132 GATGATGATCTGCCTGGGCACGTC-GGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 ||||||| | || |||| | || | ||||| ||| ||| | | ||| | | Sbjct 9892 ACGAATGATCT-CGTGTACACGGCTCTCCGGCAGCTTGGTGACCAGCTTGGAGTACAAAA 9950 Query 794191 GGCAGGCAAAGTC 794203 ||||||| ||||| Sbjct 9951 GGCAGGCGAAGTC 9963 Score = 172 bits (190), Expect = 9e-37 Identities = 203/271 (75%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| || || || || || ||||| ||||| |||||| |||||| ||| Sbjct 10301 GCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCG 10360 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| ||||| |||||||| ||||||||||| ||||| ||||||| ||| ||||| Sbjct 10361 TCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGC 10420 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | ||||| || | |||| | ||||||| |||||| || ||||| |||||| Sbjct 10421 TTGCTCCAGT---CCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAG 10477 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 |||||||| || |||||||||| ||| | | || || | | ||||||||||| || || Sbjct 10478 GCCTCGGCTTTCTTGTACATCTGCCACACTTCG-TGTTCCTGAATGGGGAACAGCACGAA 10536 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||||| || | ||||||| Sbjct 10537 ACGGTTGGGGTTCTCAACGAGGAACGGCTCG 10567 >seq420 Length=97367 Score = 174 bits (192), Expect = 2e-37 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| | ||||| || ||| | | Sbjct 78188 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTAGCCAGCTCACCGGGGA 78247 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| ||||||||||||||| || | ||| |||||| | Sbjct 78248 GCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 78307 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 78308 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCGTTGATGAACGAGTTCA 78367 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 78368 TGATCGACATGCCGCGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 78427 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 78428 AGATGTAGGTCGAGTACGA 78446 >seq5974 Length=111941 Score = 170 bits (188), Expect = 3e-36 Identities = 193/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| | ||||| || ||| | | Sbjct 32228 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTAGCCAGCTCACCGGGGA 32169 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| ||||||||||||||| || | ||| |||||| | Sbjct 32168 GCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 32109 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| || ||||||| Sbjct 32108 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCGTTGATGAAGGAGTTCA 32049 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 32048 TGATCGACATGCCGCGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 31989 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 31988 AGATGTAGGTCGAGTACGA 31970 >seq6116 Length=201726 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||||||| | ||||| || ||| | | Sbjct 125456 TGAACTTGGTCACAGCCTTCGTGCCTTCTGACACGGCGTGCTTAGCCAGCTCACCGGGGA 125397 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 125396 GCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTGGACTTCTTGTTGTAAC 125337 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| || ||||||| Sbjct 125336 GCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCGTTGATGAAGGAGTTCA 125277 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 125276 TGATCGACATTCCACGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 125217 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 125216 AGATGTAGGTCGAGTACGA 125198 >seq2358 Length=23655 Score = 141 bits (156), Expect = 1e-27 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| |||||||| |||||||||||||| || || | |||||| | || |||||| Sbjct 13902 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 13843 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 13842 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 13783 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| ||||| ||| || ||||| ||||| | || || || ||||| ||||| Sbjct 13782 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 13723 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||||| ||| ||| |||| || ||||| || || || || || | ||| Sbjct 13722 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGT 13663 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| |||||||| || || || || |||| | ||| || |||||| |||||| Sbjct 13662 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 13603 Query 2073837 GGT 2073839 || Sbjct 13602 CGT 13600 Score = 102 bits (112), Expect = 1e-15 Identities = 262/403 (65%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 || |||| |||||||||||| | |||| | |||||||||| |||||| ||||| Sbjct 14300 GTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGC 14241 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 | |||||||| ||||| || | ||| || |||| | || | ||| | | Sbjct 14240 ACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTC 14181 Query 2071732 GTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGG 2071791 | | ||| || || | | || || ||||| | |||| | Sbjct 14180 TTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAG 14121 Query 2071792 CACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC 2071851 ||||||| ||| || || || ||| || || || | ||| | ||| | | || Sbjct 14120 CACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCC 14061 Query 2071852 ACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGT 2071909 || | ||| || || || |||| |||||| ||||||| | ||||| || |||| Sbjct 14060 ACTCTCTTCATGAAGAGATCAGGCAC--CCACAGCGCGTAAAACAAGTCGCGGGCGCGGT 14003 Query 2071910 TCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACG 2071969 | ||| || ||||||||||| ||| || || | |||| | |||||||||||||| Sbjct 14002 GCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACG 13943 Query 2071970 GCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| |||| || || | |||||||||||| || ||||| Sbjct 13942 GCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 13900 >seq335 Length=47939 Score = 100 bits (110), Expect = 5e-15 Identities = 286/437 (65%), Gaps = 2/437 (0%) Strand=Plus/Plus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 |||| || | | || |||||| ||| | | ||| |||| ||||||||||||| || Sbjct 9445 CGCCGAGTACGGAGCTCGTGACGGTGCTGGCTCCGCTCTTCTCCACGCCGCGCATGACCA 9504 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGACCTCGCTGA 118701 |||||||| | |||| | || || | ||||| | | |||| | | | Sbjct 9505 TACACATGTGTGTGGCCTCAATGACCACAGCCACGCCCTTGGGTTCAATGACGCCCATAA 9564 Query 118702 TGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGT 118761 || | |||||||| || || |||||||||||| | || ||||| | | Sbjct 9565 TGGCATTAGCGATCTGCTTTGTCAGTCGCTCCTGCACCTGCAGACGACGCGAGAAGACCT 9624 Query 118762 CGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGT 118821 || || |||| | |||||| || || | | |||| ||| | ||| || | || Sbjct 9625 CGCTGACTCGCGCCAGCTTGCTGAGTCCCAATACTTTGCCATTGGGGATGTACCCGATGT 9684 Query 118822 GCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGC 118881 || | ||||| | || |||| || |||||||||||||||||| | | ||| || || | Sbjct 9685 GCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTAGAGGTCGATATCAC 9744 Query 118882 GCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCC 118940 |||| | ||||||||| || || ||| |||| | || ||| | | |||| Sbjct 9745 GCACAATGACCATCTCG-TCGTGGTCCTCTTCAAACACAGCCTCGTTCAATACGTCGGTT 9803 Query 118941 AGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTG 119000 ||| || ||| || ||| ||| | || | ||||||||||| |||||| ||||| Sbjct 9804 AGGCTCTGGCCGTAGCCCTTGGTGTTGTACAATAAGGCCTTGGCCATGCGCATAGGCGTC 9863 Query 119001 TCCAAGAGGCCCTCGCG 119017 | | ||| || ||||| Sbjct 9864 TTGACGAGCCCTTCGCG 9880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915593047446338