Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4565 132 3e-26 seq4505 129 4e-25 seq1517 129 4e-25 seq1672 122 6e-23 seq759 118 7e-22 seq2652 111 1e-19 >seq4565 Length=138104 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 118003 CAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 118062 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 118063 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTC 118122 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| || ||||| || | || || || | ||| || || | || | Sbjct 118123 CTGAATTTTCTGCTTGAC--AT--TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 118178 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| |||||||| || || |||||||| Sbjct 118179 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 118215 >seq4505 Length=81093 Score = 129 bits (142), Expect = 4e-25 Identities = 148/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 71145 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| | |||||| Sbjct 71144 -TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTC 71086 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 71085 ACAAAGATCTGCATGAT 71069 >seq1517 Length=75306 Score = 129 bits (142), Expect = 4e-25 Identities = 148/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 72493 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 72434 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 72433 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 72377 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| | |||||| Sbjct 72376 -TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTC 72318 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 72317 ACAAAGATCTGCATGAT 72301 >seq1672 Length=23672 Score = 122 bits (134), Expect = 6e-23 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 22796 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 22855 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| || |||||||| |||| | || |||||||| Sbjct 22856 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 22915 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 22916 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTCCACGTCNAGNGTNATNGT 22975 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| || |||||||||||| Sbjct 22976 CTTGCCGGTCAANGTCTTCACGAAGATCTGCATG 23009 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| ||| |||| | || Sbjct 22568 CAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 22627 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 22628 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 22687 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | ||||| || | ||| || || | ||| ||||| Sbjct 22688 CTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGT 22747 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| || |||||||||||| Sbjct 22748 CTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22781 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| || || ||| |||| | || Sbjct 22112 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTC 22171 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 22172 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 22231 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | ||| ||||| Sbjct 22232 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGT 22291 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| || |||||||||||| Sbjct 22292 CTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22325 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| ||| |||| | || Sbjct 22340 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 22399 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 22400 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 22459 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | || || || Sbjct 22460 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 22519 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 22520 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| || || ||| |||| | || Sbjct 23024 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTC 23083 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 23084 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 23143 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | ||| ||||| Sbjct 23144 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGT 23203 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| || ||||||||||| Sbjct 23204 CTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 23236 >seq759 Length=119387 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||| |||||||| | || ||||||||| ||||| ||||| Sbjct 32099 TTTCCGCCACGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCA 32158 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || |||| | || ||||| ||||| || |||||||||| || |||||||| || Sbjct 32159 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 32218 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || ||||| |||||| | ||||| || | ||| Sbjct 32219 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCC 32278 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || || | |||||| || ||||||||||| Sbjct 32279 ACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32328 Score = 116 bits (128), Expect = 2e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 32344 CAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNCTCAGCGTGCGGCCGTC 32403 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| || |||||||| |||| | || |||||||| Sbjct 32404 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 32463 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 32464 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 32523 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 32524 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32556 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 32572 CAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 32631 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| || |||||||| |||| | || |||||||| Sbjct 32632 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 32691 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 32692 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 32751 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 32752 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32784 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 32800 CAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTC 32859 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| || |||||||| |||| | || |||||||| Sbjct 32860 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 32919 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 32920 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 32979 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 32980 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 33012 >seq2652 Length=38300 Score = 111 bits (122), Expect = 1e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| || || ||| |||| | || Sbjct 33064 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTC 33123 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 33124 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 33183 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | |||| || | ||| || || | ||| ||||| Sbjct 33184 CTGAATCTTCTGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACGTCGAGGGTAATGGT 33243 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| || ||||||||||| Sbjct 33244 CTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 33276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325668420061898