Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq4620 100 1e-16 seq1636 100 1e-16 >seq4620 Length=73557 Score = 100 bits (110), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 19/496 (4%) Strand=Plus/Minus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| || || || |||||| | | ||| || | ||||||||||| || || ||||| Sbjct 10839 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 10780 Query 66301 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66360 | ||| |||| || ||||| ||| |||| || | || |||||||||| ||| Sbjct 10779 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 10720 Query 66361 CTCCTCGTCAAGTCTGGCGAGCTGT--CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGG 66418 ||| || || | | ||||| | | || || | || |||||| || |||| Sbjct 10719 ACGCTCATCCGATC--GGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGG 10662 Query 66419 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66478 |||| || |||||||| || || || || || ||| || | | || || ||||| | Sbjct 10661 TGCCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTC 10602 Query 66479 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGA 66535 | ||| ||||| || | ||||| ||||| | | |||| |||| ||| | | Sbjct 10601 TTATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTA 10542 Query 66536 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATG 66592 ||| |||||||| | || |||| | || || | | || | | ||| | Sbjct 10541 ---TCTTCCTCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCC----G 10491 Query 66593 AGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 66652 || || | || || | ||| ||| | | |||||| || || || ||||| |||| | Sbjct 10490 AGGTGACGTCAGGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCC 10431 Query 66653 GCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCG 66712 | | | || ||||||||||| ||| |||||||||| || ||| || || | Sbjct 10430 GTAAGACAGCCATCAAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTGG 10371 Query 66713 TCAAGAACAAGCTGGC 66728 |||||||||| |||| Sbjct 10370 CCAAGAACAAGTTGGC 10355 >seq1636 Length=46757 Score = 100 bits (110), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 19/496 (4%) Strand=Plus/Minus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| || || || |||||| | | ||| || | ||||||||||| || || ||||| Sbjct 19469 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 19410 Query 66301 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66360 | ||| |||| || ||||| ||| |||| || | || |||||||||| ||| Sbjct 19409 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 19350 Query 66361 CTCCTCGTCAAGTCTGGCGAGCTGT--CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGG 66418 ||| || || | | ||||| | | || || | || |||||| || |||| Sbjct 19349 ACGCTCATCCGATC--GGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGG 19292 Query 66419 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66478 |||| || |||||||| || || || || || ||| || | | || || ||||| | Sbjct 19291 TGCCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTC 19232 Query 66479 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGA 66535 | ||| ||||| || | ||||| ||||| | | |||| |||| ||| | | Sbjct 19231 TTATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTA 19172 Query 66536 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATG 66592 ||| |||||||| | || |||| | || || | | || | | ||| | Sbjct 19171 ---TCTTCCTCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCC----G 19121 Query 66593 AGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 66652 || || | || || | ||| ||| | | |||||| || || || ||||| |||| | Sbjct 19120 AGGTGACGTCAGGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCC 19061 Query 66653 GCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCG 66712 | | | || ||||||||||| ||| |||||||||| || ||| || || | Sbjct 19060 GTAAGACAGCCATCAAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTGG 19001 Query 66713 TCAAGAACAAGCTGGC 66728 |||||||||| |||| Sbjct 19000 CCAAGAACAAGTTGGC 18985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242717829845010