Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1672 89.7 4e-13 seq759 86.0 5e-12 seq4565 82.4 6e-11 >seq1672 Length=23672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||||||| |||| |||| | Sbjct 22780 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 22721 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || |||||| || || |||||| | || || ||| Sbjct 22720 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 22661 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || || ||||||||| Sbjct 22660 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAAC 22601 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| | ||| ||||| || | ||||||| || Sbjct 22600 ATCCAGAAGGAGTCTACTCTCCACCTGGTGCTGCGTCTGCGAGGCGG 22554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||||||| |||| |||| | Sbjct 22324 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 22265 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || |||||| || || |||||| | || || ||| Sbjct 22264 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 22205 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || || || |||||| Sbjct 22204 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAAC 22145 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG-GGGAAATAATAAAAA 107794 || || ||||||||||| | ||| ||||| || | | || || || || ||| ||||| Sbjct 22144 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTTCGCGGTGGTAACTAAAAAAAA 22085 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || || || || || ||||| ||||||||| |||| |||| | Sbjct 23239 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 23180 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || || |||||| || || |||||| | || || Sbjct 23179 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 23120 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| || || || ||| Sbjct 23119 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTAC 23060 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||||||||| | ||| ||||| || | |||| || || Sbjct 23059 AACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTGCGTGGTGG 23010 >seq759 Length=119387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| || || || | || |||| || Sbjct 32784 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 32725 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || |||||||| || || |||||| | || || ||| Sbjct 32724 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 32665 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || || || ||||||||||||| | || || ||||||||| Sbjct 32664 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 32605 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | ||||||| || Sbjct 32604 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGG 32558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || || || || || ||||| || || || | || |||| || Sbjct 33015 AAGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 32956 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || |||||||| || || |||||| | || || Sbjct 32955 TCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGAC 32896 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | | || | || || || ||||||||||||| | || || |||||| Sbjct 32895 CAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTAC 32836 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||||||| | ||| ||||| || | ||||||| || Sbjct 32835 AACATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGG 32786 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| || || || | || |||| || Sbjct 32328 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 32269 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || |||||||| || || |||||| | || || ||| Sbjct 32268 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 32209 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || || || ||||||||||||| | || || ||||||||| Sbjct 32208 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 32149 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || || ||||||||||| | ||| ||||| || | |||| || ||||| Sbjct 32148 ATCCAGAAGGAGTCTACNCTCCACCTGGTGCTGCGTCTGCGTGGCGGAAA 32099 >seq4565 Length=138104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| ||||| || | || ||||| ||||| || |||| |||| | Sbjct 118218 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 118159 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | | | | | || || || || ||| || || || || | || || Sbjct 118158 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 118099 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| | || || |||||||| Sbjct 118098 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 118039 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| ||||| || | |||| || || Sbjct 118038 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 117989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398846941827838