Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1672 125 1e-23 seq759 120 6e-22 seq2652 116 7e-21 >seq1672 Length=23672 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| |||||||| || ||||| || || || || Sbjct 22326 CCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 22385 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || ||||| ||||| || | || || || || || Sbjct 22386 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 22445 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || |||||||| ||||| || || || |||| || ||| || || Sbjct 22446 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCAC 22504 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 22505 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 Score = 123 bits (136), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| |||||||| || ||||| || || || || Sbjct 22552 TACCGCCTCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 22611 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || ||||| ||||| || | || || || || | Sbjct 22612 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 22671 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || |||| || || || Sbjct 22672 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCC 22730 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||||||||| || || |||||||| Sbjct 22731 ACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 22780 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | ||| |||||||| || ||||| || || ||||| Sbjct 22096 TACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 22155 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || ||||| ||||| || | || || || || | Sbjct 22156 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 22215 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || |||| || || || Sbjct 22216 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCC 22274 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||||||||| || || |||||||| Sbjct 22275 ACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 22324 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| |||||||| || ||||| || || ||||| Sbjct 23010 CCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 23069 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || ||||| ||||| || | || || || || || Sbjct 23070 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 23129 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || |||||||| ||||| || || || |||| || || || || Sbjct 23130 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 23188 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||||||||| || || |||||||| Sbjct 23189 GTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 23236 Score = 104 bits (114), Expect = 5e-17 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| |||||||| || ||||| || || || || Sbjct 22782 CCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 22841 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| | | || || || || || Sbjct 22842 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 22901 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || || || || |||| || || || || Sbjct 22902 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTCCACG 22961 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 22962 TCNAGNGTNATNGTCTTGCCGGTCAANGTCTTCACGAAGATCTGCAT 23008 >seq759 Length=119387 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| || ||||| || ||||| || || || ||| Sbjct 32784 TACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAC 32843 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 32844 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 32903 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 32904 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 32963 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 32964 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 33012 Score = 118 bits (130), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| || ||||| || ||||| || || || || Sbjct 32328 TACCGCCTCGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNC 32387 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 32388 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 32447 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 32448 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 32507 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 32508 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32556 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| || ||||| || ||||| || || || || Sbjct 32556 TACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 32615 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 32616 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 32675 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 32676 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 32735 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 32736 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32784 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || ||||| || ||||| || || || ||| Sbjct 32102 CCGCCACGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCACTC 32161 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| | | || || || || || Sbjct 32162 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 32221 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || || || || |||| || ||| || || Sbjct 32222 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 32281 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 32282 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32328 >seq2652 Length=38300 Score = 116 bits (128), Expect = 7e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | ||| |||||||| || ||||| || || ||||| Sbjct 33048 TACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 33107 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || ||||| ||||| || | || || || || | Sbjct 33108 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 33167 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || ||| || || || Sbjct 33168 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGNTCGAGTCCGACGGCTCC 33226 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||||||||| || || |||||||| Sbjct 33227 ACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 33276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981749935722138