Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1672 109 1e-18 seq2652 102 2e-16 seq2358 96.9 8e-15 seq759 96.9 8e-15 seq4565 84.2 5e-11 >seq1672 Length=23672 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || ||||| Sbjct 22528 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTGAAGCAG 22469 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||| ||| ||| ||| || | || |||||||| || ||| Sbjct 22468 AAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAG 22409 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || ||| |||||| ||||||| ||||||||||||||| Sbjct 22408 CAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCTACTCTTCAC 22349 Query 206374 CTTGT 206378 || || Sbjct 22348 CTGGT 22344 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 22249 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 22190 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || |||||||||| ||||||| |||||| Sbjct 22189 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCT 22130 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || | ||||| Sbjct 22129 ACTCTTCACCTGGTGCTGCGTCTTCG 22104 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 23161 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 23102 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || |||||||||| ||||||| |||||| Sbjct 23101 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCT 23042 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 23041 ACTCTTCACCTGGT 23028 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || | || ||||| || ||| | |||| || |||||| Sbjct 22984 ACCGGCAAGACNATNACNCTNGACGTGGAGCCNTCGGACTCGATCGACAACGTCAAGCAA 22925 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 22924 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 22865 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| ||||||||||||||| Sbjct 22864 CAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACTCTTCAC 22805 Query 206374 CTTGT 206378 || || Sbjct 22804 CTGGT 22800 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 22705 GTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 22646 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || ||| |||||| ||||||| |||||| Sbjct 22645 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCT 22586 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| || || | || ||| Sbjct 22585 ACTCTCCACCTGGTGCTGCGTCTGCGA 22559 >seq2652 Length=38300 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 33201 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 33142 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || |||||||||| ||||||| |||||| Sbjct 33141 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCT 33082 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || | ||||| Sbjct 33081 ACTCTTCACCTGGTGCTGCGTCTTCG 33056 >seq2358 Length=23655 Score = 96.9 bits (106), Expect = 8e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 14264 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 14205 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 14204 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 14145 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 14144 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 14085 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 14084 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 14025 Query 173347 TAGAACAA 173354 || ||||| Sbjct 14024 TAAAACAA 14017 >seq759 Length=119387 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 32760 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 32701 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 32700 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 32641 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| |||||||| || ||| Sbjct 32640 CAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTCCAC 32581 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | || ||| Sbjct 32580 CTGGTGCTGCGTCTGCGA 32563 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 32532 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 32473 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 32472 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 32413 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 32412 CAGCTGGAGGACGGCCGCACGCTGAGNGACTACAACATCCAGAAGGAGTCTACNCTCCAC 32353 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | || ||| Sbjct 32352 CTGGTGCTGCGTCTGCGA 32335 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 32304 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 32245 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 32244 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 32185 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 32184 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACNCTCCAC 32125 Query 206374 CTTGT 206378 || || Sbjct 32124 CTGGT 32120 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 32988 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 32929 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 32928 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 32869 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 32868 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACGCTCCAC 32809 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | || ||| Sbjct 32808 CTGGTGCTGCGTCTGCGA 32791 >seq4565 Length=138104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || || || || || || ||||| | || ||||| Sbjct 118218 AAAATG---CAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 118162 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||| | || || ||||| || ||||| || || || ||||| ||| Sbjct 118161 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 118102 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| | || || || | ||| || | || Sbjct 118101 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 118042 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| || || ||||| || Sbjct 118041 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 118007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181727797350782