Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5877 327 2e-83 seq2358 161 1e-33 seq420 152 7e-31 seq5974 149 9e-30 seq6116 122 1e-21 seq335 87.8 3e-11 >seq5877 Length=64605 Score = 327 bits (362), Expect = 2e-83 Identities = 442/601 (74%), Gaps = 16/601 (3%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||| | || || ||||| ||||| || || ||||||||||| | | || || Sbjct 10567 CGAGCCGTTCCTCGTTGAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACA-CG 10509 Query 1455775 GA-TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | | ||| | |||||| | |||| ||||||||||||| ||||| || |||||| ||||| Sbjct 10508 AAGTGTGGCAGATGTACAAGAAAG-CCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGAC 10450 Query 1455834 CTCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 || | |||| | || ||||| ||| | ||| ||||||| || |||||| Sbjct 10449 CTTGTGCACGACCTCAAGG---ACTGGAGCAAGCTCACGGACAACGAGCGACACTTCATC 10393 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 |||||||| |||||||| || ||| ||||| || || |||||| ||||||| ||||| Sbjct 10392 AAGCACGTGCTCGCCTTCTT-CGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCAT 10334 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||| | || || || || |||| ||||| |||| || || || ||||||||||| Sbjct 10333 GAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGC 10274 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||| || ||||| ||||| || |||||| || || || ||||| ||| |||||||| | Sbjct 10273 CATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGC 10214 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||||||||||||| ||| | || ||||| || || | || | || | ||| ||||| Sbjct 10213 GATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGC 10154 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 ||||||| | |||||| | || | | | || | || | ||||| || | Sbjct 10153 TCACTGGGCACTCAAGTGGTGCGAC-CCGCGTGTATCCTC-CTACCCGGAGCGCCT-GCT 10097 Query 1456191 GGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 |||||| || || || || |||||||| ||||||||| ||||||| ||||||||||||| Sbjct 10096 GGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCT 10037 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 ||||||||||||||||||||||||| | |||| ||||| | |||||||| |||| Sbjct 10036 AAAGAAGCGCGGCCTCATGCCCGGTC-TGAGCTTCTCGAACGAGCTCATCAGTCGTGACG 9978 Query 1456309 A 1456309 | Sbjct 9977 A 9977 Score = 163 bits (180), Expect = 4e-34 Identities = 237/324 (73%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-ACCGAC 1456510 ||||| ||||| ||||| || | ||| | | ||| |||| ||||| | || | | | Sbjct 9971 TGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCACCAAGCTGCCGGAGAGCC 9912 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 ||| || | ||||||| ||| || || || | ||| ||| | |||||||| | || || Sbjct 9911 GTGTACACG-AGATCATTCGT-GACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTC 9854 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||| || |||| ||| || || |||||| | || |||||||||||||||||||| || Sbjct 9853 GCTCCCTGTGGAGCTGATTGGTATGAACTCTGCC-CTCATGTGCCAGTACATTGAGTTC- 9796 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || ||||| |||||| |||| || || | ||| ||||| | ||||| Sbjct 9795 GTGGCTGACCGTCTGCTCTACTCGCTTGG-TGTGTCCAAGATCTACCACGCTAAGAACCC 9737 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 || |||||||| ||||||| ||| | ||||||||||||||||||||| || || Sbjct 9736 TTTTGACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGT 9677 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGT 1456772 ||||||||| ||||||||||||| Sbjct 9676 GGGCGAGTACTCCAAGGCCGGCGT 9653 >seq2358 Length=23655 Score = 161 bits (178), Expect = 1e-33 Identities = 220/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| |||||||||| |||| ||||| || || || || ||||| || ||| Sbjct 13600 ACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAACGCC 13659 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||| || || ||| || || ||||| || |||| ||| ||| || || || Sbjct 13660 GGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCTATT 13719 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 |||||||| || ||||| || ||||| ||||| ||||| || ||| ||||| ||| Sbjct 13720 GAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGTATC 13779 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 ||| | | | | ||||| | |||||| | | |||| | ||||| |||||| Sbjct 13780 GGTAT--CAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGGCT 13837 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || |||||| || | |||||| | || || |||||||||||||| ||||| || |||| Sbjct 13838 CCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACC 13897 Query 260181 AGTGC 260185 || || Sbjct 13898 AGGGC 13902 >seq420 Length=97367 Score = 152 bits (168), Expect = 7e-31 Identities = 208/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| ||| ||| || |||||||| || ||||||||| ||| | Sbjct 78490 CGGTTGCCAAGTCCGGCAAGGGCAAGGGCAAGAAGCGAGTTGAGTCGTACTCGACCTACA 78431 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||| || | | ||| | | | | | | Sbjct 78430 TCTACAAGGTGCTGCGTCAGGTGCACCCCGACACGGGT-----ATCAGCAAGCGCGGC-A 78377 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||||| |||||||||| |||| ||||||| | | |||||||| Sbjct 78376 TGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATCGCCTCGGAGGCCGGCA 78317 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||| | ||||||| ||| | || |||||||||||||| ||||||| Sbjct 78316 AGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGATCCAGACTGCCGTGC 78257 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | ||| || ||||| | ||||||||| || |||||||| Sbjct 78256 GTCTCATGCTCCCCGGTGAGCTGGCTAAGCACGCCGTGTCGGAGGGCAC 78208 >seq5974 Length=111941 Score = 149 bits (164), Expect = 9e-30 Identities = 207/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| ||| ||| || |||||||| || ||||||||| ||| | Sbjct 31926 CGGTTGCCAAGTCCGGCAAGGGCAAGGGCAAGAAGCGAGTTGAGTCGTACTCGACCTACA 31985 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||| || | | ||| | | | | | | Sbjct 31986 TCTACAAGGTGCTGCGTCAGGTGCACCCCGACACGGGT-----ATCAGCAAGCGCGGC-A 32039 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||||||||||||||| || |||||||||| |||| ||||||| | | |||||||| Sbjct 32040 TGTCGATCATGAACTCCTTCATCAACGACATTTTCGAGCGCATCGCCTCGGAGGCCGGCA 32099 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||| | ||||||| ||| | || |||||||||||||| ||||||| Sbjct 32100 AGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGATCCAGACTGCCGTGC 32159 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | ||| || ||||| | ||||||||| || |||||||| Sbjct 32160 GTCTCATGCTCCCCGGTGAGCTGGCTAAGCACGCCGTGTCGGAGGGCAC 32208 >seq6116 Length=201726 Score = 122 bits (134), Expect = 1e-21 Identities = 189/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 724872 GGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAG 724931 ||| || |||||||| | | ||||||||| ||| |||||||||||||| ||| Sbjct 125174 GGCAAGGGCAAGAAGCGTGTCGAGTCGTACTCGACCTACATCTACAAGGTGCTGCGTCAG 125233 Query 724932 GTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTT 724991 ||||||||| || | | ||| | | | | ||||||||||||||||| || Sbjct 125234 GTGCACCCCGACACGGGT-----ATCAGCAAGCGTGGA-ATGTCGATCATGAACTCCTTC 125287 Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 |||||||||| |||| ||||||| | |||||||| ||| |||| | ||||||| Sbjct 125288 ATCAACGACATTTTCGAGCGCATCGCTTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAG 125347 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| | || || ||||||||||| || ||||| || || | | ||| || Sbjct 125348 AAGTCCACCCTGTCCAGCCGTGAGATCCAGACGGCTGTGCGTCTCATGCTCCCCGGTGAG 125407 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||||||||| || || ||||| Sbjct 125408 CTGGCTAAGCACGCCGTGTCAGAAGGCAC 125436 >seq335 Length=47939 Score = 87.8 bits (96), Expect = 3e-11 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2133441 CGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGC 2133500 ||||| || ||| | | || || |||||| ||||||||||| | || | ||| Sbjct 9880 CGCGAAGGGCTCGTCAAGACGCCTATGCGCATGGCCAAGGCCTTATTGTACAACACCAAG 9821 Query 2133501 GGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGAC 2133560 ||| | || || ||| |||||| | || || | ||||| |||| ||| Sbjct 9820 GGCTACGGCCAGAGCCTAACCGACGTATTGAACGAGGCTGTGTTTGAAGAGGACCACGAC 9761 Query 2133561 GAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCC 2133620 |||||||| | ||||| ||||| ||| | | ||||||||||||||||||| || |||| Sbjct 9760 GAGATGGTCATTGTGCGTGATATCGACCTCTACTCCATGTGCGAGCACCACATGGTGCCG 9701 Query 2133621 TTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAG 2133680 || | ||||| | ||| | || ||| | ||| ||||| | | || || |||||| Sbjct 9700 TTCACGGGCAAAGTGCACATCGGGTACATCCCCAATGGCAAAGTATTGGGACTCAGCAAG 9641 Query 2133681 ATCCCGCG 2133688 | |||| Sbjct 9640 CTGGCGCG 9633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177218792811004