Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5877 116 5e-21 >seq5877 Length=64605 Score = 116 bits (128), Expect = 5e-21 Identities = 364/556 (65%), Gaps = 11/556 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || | |||||| || | ||| || | ||||| || || | || Sbjct 9952 GCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAG 10011 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| || |||||||| |||| |||| ||||| || || |||| Sbjct 10012 ACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGG-AGCAGAAAGAGCCCGAGAAGA 10070 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---TTAT 39791 |||||||||| || || || || || | || | ||| ||| | || | Sbjct 10071 AGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGT 10130 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||| ||||||| | ||| |||||| | |||||||| || || || || ||| Sbjct 10131 CGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCAC 10190 Query 39852 TAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| | || || ||| | || || | || || || || | ||| || Sbjct 10191 GCAGGAGATGGTCCTTCTCGATCGC-GTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 10249 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| ||||| || ||||| || || || || || | || || | Sbjct 10250 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 10309 Query 39971 ATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || || || || || || | ||||| || || ||||| || || ||||| | Sbjct 10310 ACCTGCACTTCGTTGCTGAAGTTCAT--GGCCAAGTTCTCGTTCACGATACCGTCACTGG 10367 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || || || || | || || || || || | | || | | || | || ||| Sbjct 10368 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCC 10427 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| |||| || | | || | || ||||| ||||| || || ||||| || | Sbjct 10428 AGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 10487 Query 40149 TTTTGTACATGTTCCA 40164 | |||||||| | ||| Sbjct 10488 TCTTGTACATCTGCCA 10503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686856062576880