Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq343 96.9 3e-15 >seq343 Length=80906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 218/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || | ||| ||||||||||| | || | | |||||| |||| || Sbjct 73768 CCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAACGAGATGGCCCTGCCGCC 73827 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| || |||| || ||||| |||||| ||| || ||| | || ||||| |||| || Sbjct 73828 TTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTATCGTGTCAGATGTACCA 73887 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||| | |||||||| || || || || || ||||| || || || || ||||| || Sbjct 73888 GCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCCAGCTACGCGCTGCTGAC 73947 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCA--CACGTTA--G 41238 || ||||||| || || |||||||||| || ||||| ||||||| | Sbjct 73948 ACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGA----GTTCATCCACGTTATCG 74003 Query 41239 GAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA-CAACTGACACGAAAA 41297 | || | ||| | ||| | || || | || || | ||||| || || ||||| | | Sbjct 74004 GCGACGCACACGTGTACCTGAACCATGTGGAACCCCT-TCAGAAGCAGCTTACACGCACA 74062 Query 41298 CCTAGACCATTTCCAACGCTACT 41320 || | || || || || || || Sbjct 74063 CCACGTCCGTTCCCGACTCTCCT 74085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426248182710