Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5877 111 5e-19 seq2358 98.7 3e-15 >seq5877 Length=64605 Score = 111 bits (122), Expect = 5e-19 Identities = 309/455 (68%), Gaps = 23/455 (5%) Strand=Plus/Minus Query 443433 GCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCT---AC 443489 |||||||| ||| | || ||||||||||| ||||| ||| | | ||| || Sbjct 10380 GCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAAC 10321 Query 443490 GAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAAC 443549 ||| || ||| ||||||| || | |||||| | ||||| ||| || |||||| Sbjct 10320 GAAGTGCAGGTGC---CCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAAC 10264 Query 443550 ATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAAC 443607 |||||| | ||||||||| ||| | | ||| ||||| || || || || | ||| | Sbjct 10263 ATTCACTCGGAGGTCTAC--TCACT-GCTCATTGACACGTACATC--AAGGACG-CGATC 10210 Query 443608 -AGC-GGTCCATCTTCT-CAT--CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCG 443662 || || |||||| || | | | || | ||||| || | |||| | ||| ||| Sbjct 10209 GAGAAGGACCATCTCCTGCGTGCCATTGA-GACCATCCCTTGTGTCACGAAGAAGGCTCA 10151 Query 443663 CTGGGCAAAACAGTGGCTCGAAC-GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTT 443721 ||||||| ||||| ||| | | | ||| | || | ||||| || | |||| Sbjct 10150 CTGGGCACTCAAGTGGTGCGACCCGCGTGTATC-CTCCTACCCGGAGCGCCTGCTGGCTT 10092 Query 443722 TTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAA 443781 | |||| || ||||| | || || ||| |||| ||||||||| ||| | || Sbjct 10091 TCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT-CTTTCTGCTCCATCTTTTGGCTAAAG 10033 Query 443782 AAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGT 443841 ||||| || || |||| |||||||| ||| ||||| || |||||||| |||||||| Sbjct 10032 AAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGC 9973 Query 443842 TTGCATTGCGACTTCGCCTGTCTTCTCTACACCAA 443876 |||| ||||||||||| ||| | ||| |||| Sbjct 9972 ATGCACACGGACTTCGCCTGCCTTTTGTACTCCAA 9938 >seq2358 Length=23655 Score = 98.7 bits (108), Expect = 3e-15 Identities = 353/539 (65%), Gaps = 10/539 (2%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | |||||||| ||| || ||||||||| || || || || || Sbjct 13845 CGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGG 13904 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 || || ||| || ||||| | |||||| |||||||||||||||||||| || || Sbjct 13905 AGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC-GTGTTCG 13963 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACAT-CTAC 255148 ||| | ||| | || ||| | ||| || |||||||||| | | Sbjct 13964 AGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTT 14023 Query 255149 AC-CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAG 255207 || |||||| ||||| ||||| || ||| | ||||| | | | ||||| Sbjct 14024 ACGCGCTGT-GGGTGC-CTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAG 14081 Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267 | | ||||||||| | | || ||||| ||| | ||||| || ||||||||| Sbjct 14082 TTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGC 14141 Query 255268 ACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGA 255326 |||||| |||||||| | || || | |||| | ||| | ||| || || Sbjct 14142 TCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAA-TCAACGCTCAGCAGC 14200 Query 255327 TCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAG 255386 | ||| | | || | | ||| | || || ||| |||| ||| | | |||| | Sbjct 14201 TGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGG 14260 Query 255387 AC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTG 255445 || || ||| |||| ||||||||| | || |||||||| || | ||| | Sbjct 14261 ACGCAGCTAACCGCA-AGTCGAACCAGCAGAACTTGGGTACGATCCGTTCCAGCAACTTA 14319 Query 255446 TGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 ||| ||| | | | | |||||||| | | |||||||| || |||||||||||||| Sbjct 14320 TGCTGCGAAGTCATGGAGTACACGTCACCCGATGAGGTGGCAGTGTGCAACTTGGCGTC 14378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588211006891190