Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2358 242 5e-59 seq5877 165 1e-35 seq3337 95.1 1e-14 >seq2358 Length=23655 Score = 242 bits (268), Expect = 5e-59 Identities = 1087/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 15249 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 15190 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 15189 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 15135 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || |||| || || | ||| ||||| |||||| |||||||| ||| | Sbjct 15134 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 15076 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| |||||| || || ||| || || || | || ||||| | || Sbjct 15075 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 15016 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 15015 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 14958 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 14957 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 14898 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 14897 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 14838 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGAGCG 118310 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 14837 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 14781 Query 118311 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 14780 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 14726 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 118420 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 14725 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 14669 Query 118421 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | | | || ||| | ||| || || || || || || ||| |||| | Sbjct 14668 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 14609 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 14608 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 14551 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CGG 118596 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 14550 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 14492 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 14491 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 14432 Query 118657 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 14431 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 14379 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 ||||||| || ||||| | |||||| |||||||| || | ||| ||| Sbjct 14378 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 14319 Query 118776 AAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| |||| || || |||||||||| || || ||||| |||| || Sbjct 14318 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCG 14262 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 14261 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 14203 Query 118893 ACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGA 118950 || | || | | | || | | || | | || || | |||||||||| || | Sbjct 14202 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 14144 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 14143 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 14084 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 14083 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 14024 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 14023 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 13965 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 119186 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 13964 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 13905 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| ||||| | || ||| ||||||| ||||| | ||| || || || || Sbjct 13904 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 13845 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || ||| || || || || || ||| |||| | || | ||| || Sbjct 13844 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 13785 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 13784 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 13725 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || |||||| ||| | || | |||||||| |||| ||||| | || Sbjct 13724 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGC 13665 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || || |||||||||||||| || || ||||| |||| | || | || ||||| || Sbjct 13664 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 13606 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 13605 GTACGTCTCCA 13595 >seq5877 Length=64605 Score = 165 bits (182), Expect = 1e-35 Identities = 394/583 (68%), Gaps = 22/583 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 9668 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 9727 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | || | || | ||| |||| | | ||| ||||| Sbjct 9728 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 9787 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | ||||||||||| || || | ||| Sbjct 9788 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 9847 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | ||| | | |||||| ||||||| || || | ||| |||| Sbjct 9848 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 9906 Query 129967 AAT---GGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-----GGCA 130018 | | |||||| ||| | | | | || |||| |||| | | ||| Sbjct 9907 TACACGGCTCTCCGG--CAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGCAGGCG 9958 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || ||| ||| | ||||||||||| |||||| || |||||||||| |||||| ||| Sbjct 9959 AAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGC 10018 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || |||||||| | ||| || || | || || ||||| ||||||||||| || Sbjct 10019 ATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCT 10078 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCA 130197 |||||| ||||| || | || ||||| | ||||| | || | || |||| Sbjct 10079 TCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCA 10137 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| | ||||| || ||||| ||| || ||| |||| ||||| || || | ||| Sbjct 10138 CTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAG 10197 Query 130258 TTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | | ||| || ||| | || ||||||||| | || ||||| Sbjct 10198 ATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 10239 >seq3337 Length=105003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 20253 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 20312 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 20313 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 20364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618387719637520