Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2358 224 1e-53 seq5877 111 2e-19 seq3337 104 3e-17 seq4836 100 3e-16 >seq2358 Length=23655 Score = 224 bits (248), Expect = 1e-53 Identities = 1075/1677 (64%), Gaps = 44/1677 (3%) Strand=Plus/Plus Query 104283 TGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||||| ||||| || | || | |||| ||||| || || || |||||| Sbjct 13595 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 13653 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || ||| | || || |||| ||||||||| | || | |||| ||| Sbjct 13654 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGAC 13713 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || || || | || || | | | || || ||||| || ||||| || Sbjct 13714 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 13773 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 104520 ||||| || || || || | | | |||| ||| | || || || || || || Sbjct 13774 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGAA 13832 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || ||||| || ||| | || || ||||||| ||| || |||||||| Sbjct 13833 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 13892 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 | || | || || || ||||| || |||| |||| | ||||| |||||||| Sbjct 13893 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 13952 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 || | | |||||||| || ||||| ||||| ||| | ||| | || ||| Sbjct 13953 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 14012 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| | || | ||| || ||| | || |||||||||||||||||||| |||| | ||| Sbjct 14013 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGG 14072 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGG 104816 ||| ||| | | || ||||| || | || |||||||| | ||| ||| | ||| || | Sbjct 14073 CAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATG 14131 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 |||||||||| || || |||||||||| | ||||| || ||| | ||| | | Sbjct 14132 AGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACG 14191 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 14192 CTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGC 14251 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| ||||| ||||| ||| || || |||| |||||| |||| ||| Sbjct 14252 TCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC---CGTT 14308 Query 104997 C---CAATCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGT 105052 | ||| | || ||| || |||| | || | || |||||| ||| ||||| Sbjct 14309 CCAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGC 14367 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||| | || || | || || || | || |||||| | || | || || || Sbjct 14368 AACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTAC 14421 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | | ||| | || || || |||| ||||| |||| || || || Sbjct 14422 AAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTC 14481 Query 105173 AATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 || | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 14482 AACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTAT 14540 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 || || |||||||| ||||||| ||||| || | |||| || || | | Sbjct 14541 TGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCA 14600 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 ||| ||| | || | ||| || ||||| || || || || | ||| || Sbjct 14601 AGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTC 14660 Query 105352 TTCAGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 ||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 14661 GATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CA 14716 Query 105410 -CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--AC 105463 ||||| ||| || || || ||||||| || | ||| | || || | || Sbjct 14717 GTAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAAC 14775 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 |||| || || || || | ||| | | ||||| |||||| || || | || Sbjct 14776 TGGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCA 14835 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| ||||||||||| || || ||| |||| || || || | | || || ||| Sbjct 14836 CCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTAC 14895 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 ||| | ||||| || | | | || || ||||| ||| || |||||| || Sbjct 14896 ACGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATCGTTAACAAGTAT 14955 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGG 105701 || || | || || | ||| | || | ||| | ||| || | | ||| || Sbjct 14956 CTGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTC 15013 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 |||| | ||||| || | || || | ||| ||||| |||| ||||| || || Sbjct 15014 TGAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGT 15073 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || || ||||| |||||| ||||| ||| | ||| || | || || ||||| | Sbjct 15074 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-C 15132 Query 105822 GCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 |||| || || ||||| |||| || ||| | || || || ||| Sbjct 15133 GCTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAG 15192 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 15193 CTGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 15249 >seq5877 Length=64605 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 10107 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 10048 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 10047 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 9988 Query 94924 TCTCGTGACGAGGG 94937 |||||||||||| Sbjct 9987 AGTCGTGACGAGGG 9974 >seq3337 Length=105003 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 ||||||| ||| | |||||| || ||||| | || ||||| ||||||||||||||| Sbjct 20238 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 20297 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || || || || |||||||||| || || || ||||| |||| |||||| || |||||| Sbjct 20298 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 20357 Query 169433 TCGGT 169437 || || Sbjct 20358 TCCGT 20362 >seq4836 Length=35686 Score = 100 bits (110), Expect = 3e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 11190 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 11133 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 11132 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 11073 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 11072 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 11013 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 11012 TACCAGGC 11005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216020152080