Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2358 246 3e-60 seq3337 114 1e-20 seq6109 100 3e-16 seq126 95.1 1e-14 >seq2358 Length=23655 Score = 246 bits (272), Expect = 3e-60 Identities = 341/472 (72%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 13597 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 13656 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| |||||||| |||| ||| |||||||||| Sbjct 13657 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCT 13716 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 13717 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 13776 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGA---ACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| || | || || || ||| || ||||| Sbjct 13777 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGCT-AC--ATCCGCGGCACGAA 13832 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 13833 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 13892 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 13893 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 13952 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| ||| Sbjct 13953 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 14012 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 14013 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 14064 Score = 167 bits (184), Expect = 3e-36 Identities = 534/814 (66%), Gaps = 37/814 (5%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| || || || || || || ||| |||||| Sbjct 14452 ACGCGCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG 14511 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 14512 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 14571 Query 55253 ATGCTCGGATTGCCC-TTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTT 55308 | | | | | | | ||||| | || || ||||| ||| | ||| || ||||||| Sbjct 14572 CTCAT-GAACTACGCGTTCGAGAGCCCGCAA---GCTCGTGAATTGAACAAGAACATCTT 14627 Query 55309 C-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGA 55367 | || || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 14628 CGAGACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTC 14686 Query 55368 CCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGG 55427 | ||||||||||||| | || || || ||||| | |||||||||| | |||| Sbjct 14687 CTTACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGG 14746 Query 55428 GCAAGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTT 55473 || ||| ||| ||| | ||| || | | || ||||| | || | Sbjct 14747 GC--GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGT-CATTA 14803 Query 55474 GTGG-GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || || || ||||| ||||| || || || ||||| || || || |||||||||| Sbjct 14804 AACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGA 14863 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| |||||| ||||||| ||| || || Sbjct 14864 TCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTGT 14923 Query 55593 TAGCAGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCA 55649 | || |||||||| || |||| |||||| | || | ||||| || || || Sbjct 14924 TGGCTGGTGAGTT---CACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCG 14980 Query 55650 ACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATC 55709 || |||| ||| | | | | ||| || | || || || || ||||| Sbjct 14981 GCATTTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAAGG 15040 Query 55710 T---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | ||| ||||| | | ||||||| ||| ||||||||||||||| |||| Sbjct 15041 TCAAGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 15100 Query 55767 AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGA 55826 || | | | ||| || ||||| ||||| || || ||| |||| ||||| ||| Sbjct 15101 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 15160 Query 55827 ACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 ||||| ||| | | || | | ||| ||| || ||||||||||||| |||| Sbjct 15161 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 15220 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||||||||||| || |||||||| |||| Sbjct 15221 AGAAGGGACTCAAGACCGGCATGTACTACATGCG 15254 >seq3337 Length=105003 Score = 114 bits (126), Expect = 1e-20 Identities = 189/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 19313 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 19372 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 19373 ACCTGACGGGTACAGTAGAGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 19432 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 19433 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACC 19492 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 19493 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 19552 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || || | ||| || ||||| Sbjct 19553 CTTCCGCTGCGAGATNTTGAGACCATCGACCAC 19585 Score = 105 bits (116), Expect = 7e-18 Identities = 150/206 (73%), Gaps = 14/206 (7%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 19314 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 19373 Query 117365 CCACTCGGCTCCA--AGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 || ||| | || ||||| |||||| |||| ||||| |||| || |||| ||||| Sbjct 19374 CCTGACGGGTACAGTAGAGG--CAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGA 19431 Query 117423 CAATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCAC 117477 ||||||| || |||||| || || |||||||| || || ||||| | || Sbjct 19432 CAATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAAGCTGTGTGCTCACTGCA- 19486 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCA 117503 ||| || ||||||||||||||||||| Sbjct 19487 GTAACCAGCCAGCTGAGCCACCTTCA 19512 >seq6109 Length=29660 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13156 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13097 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13096 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13037 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13036 TATTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 12977 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 12976 CGTAGCCAGCCAACTGTGCCACCTT 12952 >seq126 Length=29586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 23388 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 23329 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 23328 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 23269 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 23268 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 23215 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | |||||||| | Sbjct 23214 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAGTTGGTCCGCGTCGAGGACT 23155 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 23154 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 23096 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 23095 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 23036 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 23035 TGTTCTCAT 23027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547173987491600