Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq343 158 1e-33 >seq343 Length=80906 Score = 158 bits (174), Expect = 1e-33 Identities = 446/677 (66%), Gaps = 25/677 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || |||||||| | | |||||| ||||| ||||| || | |||| Sbjct 74052 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 73993 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29981 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 73992 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 73935 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 73934 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 73875 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| | || |||| | ||||| ||||| || | |||||| || || || |||| Sbjct 73874 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 73815 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | | || |||||||| || ||| | || || | ||| || || Sbjct 73814 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 73755 Query 30162 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 73754 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 73699 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 73698 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 73639 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 73638 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 73579 Query 30338 GCGTCCCAGATCTTTACCCCCTTCT----CAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||||||| || | | | |||| ||||| | | || ||||| || || Sbjct 73578 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAGTG----TGGGCACTTGTGTCTCCACT 73523 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||||| |||||||| | || | ||| || |||| |||||||| || | Sbjct 73522 AATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAA 73463 Query 30454 GGGAA----ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTC 30509 |||| | ||| ||| || | | |||| ||| | ||||| || ||||| | Sbjct 73462 TGGAAAGACATTGT-TCTTCAGACTGAACCTCATCTGCGCTCCAAAGACCGACAACGTGC 73404 Query 30510 CCGTGCCCGTCCTGTCT 30526 |||| || || | |||| Sbjct 73403 CCGTTCCAGTACGGTCT 73387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406279985381064