Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq343 104 2e-17 >seq343 Length=80906 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 || |||| || || || || || || || || ||||| || |||||| | || || Sbjct 74028 TGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGGATGAACTCGCCAGGTTTTAGTCCC 73969 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 |||| || |||| || ||||| || ||||||||| | || ||||| || || Sbjct 73968 GTCACTTGTGCAACCAGTCGTGTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCA 73909 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 ||||||||||| || |||| |||||||| || || || | |||||||| ||||| || Sbjct 73908 AGACCCATGTCGGCCGATCGCTGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAG 73849 Query 118660 AACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| | | ||||| || || ||||| |||| Sbjct 73848 AACTGGCAGAACATGTGGCAAGGCGGCAGGGCCAT 73814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414445774080088