Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq759 156 3e-33 seq1672 150 1e-31 seq2652 134 1e-26 seq4565 132 3e-26 seq4505 125 5e-24 seq1517 122 6e-23 >seq759 Length=119387 Score = 156 bits (172), Expect = 3e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 32554 CATACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 32613 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || || ||||||||||||||||| || | Sbjct 32614 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 32673 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 32674 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTC 32733 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || | ||||||||||||||| ||||| Sbjct 32734 CACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32784 Score = 150 bits (166), Expect = 1e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 32782 CATACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 32841 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| ||||||||||| || || ||||||||||||||||| || | Sbjct 32842 ACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 32901 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 32902 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTC 32961 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || | ||||||||||||||| ||||| Sbjct 32962 CACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 33012 Score = 149 bits (164), Expect = 5e-31 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 32326 CATACCGCCTCGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTC 32385 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| |||| ||||||||||| || || ||||||||||||||||| || | Sbjct 32386 NCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 32445 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 32446 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTC 32505 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || | ||||||||||||||| ||||| Sbjct 32506 CACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32556 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 32100 TTCCGCCACGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCAC 32159 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| ||||||||||| || || ||||||||||||||||| || | | Sbjct 32160 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 32219 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | |||||||| ||| ||||| ||||| | | | || | ||| | | |||| Sbjct 32220 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 32279 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||| |||||||| || || | ||||||||||||||| ||||| Sbjct 32280 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32328 >seq1672 Length=23672 Score = 150 bits (166), Expect = 1e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||||||| || |||||| ||||||||||| || Sbjct 22322 CATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 22381 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||| || | Sbjct 22382 GCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 22441 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||||||||||| | | || | ||| | | || Sbjct 22442 CGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 22501 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||| |||||||| || || | ||||||||||||||| ||||| Sbjct 22502 CACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||||||| || |||||| |||||||||||||| Sbjct 23006 CATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATC 23065 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||| || | Sbjct 23066 GCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 23125 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||||||||||| | | || | ||| | | || Sbjct 23126 CGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 23185 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| ||||| || || | |||||||||||||| ||||| Sbjct 23186 CACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 23236 Score = 140 bits (154), Expect = 2e-28 Identities = 177/242 (73%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 44098 TTTTTATTTCATTCCC-CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||||| ||| || || || | || | || |||||||||||| || |||||| |||| Sbjct 22084 TTTTTTTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGA 22143 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 ||||||||||| || ||| |||| || |||||||| || || ||||||| ||||| Sbjct 22144 TGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCT 22203 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGT 44276 |||| || | || | |||||||| ||| ||||||||||||| | | || | || Sbjct 22204 GCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGT 22263 Query 44277 CGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | | | ||||| || | ||||| ||||| || || | |||||||||||||| |||| Sbjct 22264 CCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCA 22323 Query 44337 TG 44338 || Sbjct 22324 TG 22325 Score = 140 bits (154), Expect = 2e-28 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||||||| || |||||| ||||||||||| || Sbjct 22778 CATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 22837 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || || ||||||||||||||||| || | Sbjct 22838 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 22897 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 22898 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTC 22957 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | || || ||||| || || | |||||||||||||| |||||| Sbjct 22958 CACGTCNAGNGTNATNGTCTTGCCGGTCAANGTCTTCACGAAGATCTGCATG 23009 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 22550 CATACCGCCTCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 22609 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||| || | Sbjct 22610 GCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 22669 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||||||||| | | | || | ||| | | || Sbjct 22670 CGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 22729 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | ||||| ||||| || || | |||||||||||||| |||||| Sbjct 22730 CACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22781 >seq2652 Length=38300 Score = 134 bits (148), Expect = 1e-26 Identities = 175/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 44098 TTTTTATTTCATTCCC-CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||||| ||| || || || | || | || |||||||||||| || |||||| |||| Sbjct 33036 TTTTTTTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGA 33095 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 ||||||||||| || ||| |||| || |||||||| || || ||||||| ||||| Sbjct 33096 TGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCT 33155 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGT 44276 |||| || | || | |||||||| ||| ||||||||||||| | | | | || Sbjct 33156 GCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGNTCGAGT 33215 Query 44277 CGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | | | ||||| || | ||||| ||||| || || | |||||||||||||| |||| Sbjct 33216 CCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCA 33275 Query 44337 T 44337 | Sbjct 33276 T 33276 >seq4565 Length=138104 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || || |||||| ||||||||||| || | Sbjct 117989 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 118048 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| ||||| ||||||| ||||||||| || | || Sbjct 118049 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 118108 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| || |||||||| || ||| | ||| |||| | | |||| Sbjct 118109 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGT--CAATGCTGTCCGACGGCTCCA 118166 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||| || ||||| ||||| |||||||| ||||| || ||||| Sbjct 118167 CGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 118215 >seq4505 Length=81093 Score = 125 bits (138), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 71142 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| || | ||| || ||||| ||||| | ||||||||| Sbjct 71141 --CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCAC 71084 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 71083 AAAGATCTGCATGAT 71069 >seq1517 Length=75306 Score = 122 bits (134), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 72493 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 72434 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 72433 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 72374 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| || | ||| || ||||| ||||| | ||||||||| Sbjct 72373 --CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCAC 72316 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 72315 AAAGATCTGCATGAT 72301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359963452693614