Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4565 147 5e-30 seq1672 132 1e-25 seq2652 129 1e-24 seq4505 118 3e-21 seq1517 118 3e-21 >seq4565 Length=138104 Score = 147 bits (162), Expect = 5e-30 Identities = 162/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 118218 AAAATGC---AGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 118162 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||| ||| || || ||||| || || ||||||||||| || |||||||| || Sbjct 118161 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 118102 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || |||||||| || || | ||||| | || Sbjct 118101 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 118042 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || || || || ||||| || || Sbjct 118041 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 118007 >seq1672 Length=23672 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 22321 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 22262 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 22261 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 22202 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || |||||| ||| || Sbjct 22201 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATC 22142 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 22141 CAGAAGGAGTCTACTCTTCACCTGGT 22116 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 22777 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 22718 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || |||||||||||||| ||||| || || || |||||||| Sbjct 22717 TCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 22658 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || ||| || ||| || Sbjct 22657 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATC 22598 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 22597 CAGAAGGAGTCTACTCTCCACCTGGT 22572 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 23233 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 23174 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 23173 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 23114 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || |||||| ||| || Sbjct 23113 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATC 23054 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 23053 CAGAAGGAGTCTACTCTTCACCTGGT 23028 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 22549 CAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 22490 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 22489 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 22430 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || ||| || ||| || Sbjct 22429 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAACATC 22370 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 22369 CAGAAGGAGTCTACTCTTCACCTGGT 22344 >seq2652 Length=38300 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 33273 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 33214 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | | ||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 33213 TCGANCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 33154 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || |||||| ||| || Sbjct 33153 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATC 33094 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 33093 CAGAAGGAGTCTACTCTTCACCTGGT 33068 >seq4505 Length=81093 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| ||||| ||||| || ||| Sbjct 71075 CAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 71134 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || |||||||| || |||||||| Sbjct 71135 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 71194 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 71195 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 71254 Query 178104 CAAAA 178108 || || Sbjct 71255 CAGAA 71259 >seq1517 Length=75306 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| ||||| ||||| || ||| Sbjct 72307 CAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 72366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || |||||||| || |||||||| Sbjct 72367 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 72426 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 72427 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 72486 Query 178104 CAAAA 178108 || || Sbjct 72487 CAGAA 72491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203636473125548