Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3161 141 2e-28 seq4510 125 2e-23 seq6011 87.8 4e-12 seq2791 86.0 1e-11 >seq3161 Length=25874 Score = 141 bits (156), Expect = 2e-28 Identities = 671/1053 (64%), Gaps = 45/1053 (4%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 15436 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15377 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 15376 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15317 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| || ||||| |||| ||| || || || Sbjct 15316 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15257 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCAT 319228 || || |||||||| |||| |||| |||| | | || | | || | || Sbjct 15256 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGT-CACAG 15198 Query 319229 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 319287 | ||||| | | || | |||||| |||| | | | ||| || || Sbjct 15197 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTA-CGAACAGTTGGTCAGA 15139 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15138 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 15079 Query 319348 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 319404 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 15078 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 15022 Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 15021 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 14965 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 319524 || ||| || || ||||||||| || |||||||| ||||| || | | | | ||| Sbjct 14964 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTCACG 14905 Query 319525 TCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTG 319584 | | ||| | ||||||| | || ||| ||||| ||| | ||||| Sbjct 14904 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 14845 Query 319585 GTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 319644 || ||||| ||||||||||| | | || ||| | | ||| ||||| || || | ||| Sbjct 14844 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 14785 Query 319645 TTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC---- 319700 ||||| ||||| || || ||||| || | || ||| || || || Sbjct 14784 TTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCATCTCGGGG 14731 Query 319701 --AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 319758 ||||| || | ||||| | ||| || | || | | |||| ||| Sbjct 14730 GTGAAGCCGACACCAGCAAGAGTGTCTTCGACCTCCTTGCGGGGC---GTGTT---CTTC 14677 Query 319759 ACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG--- 319815 | | ||||| | |||||||| | | || | || |||| | | ||| Sbjct 14676 AGGTCCTCATCGATCAGGATGAAGTCCACAA----CG-GACAG-CTCGGCCTCCTCGGCC 14623 Query 319816 ---AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAG 319871 || | ||| || ||| | |||| || | ||| ||| | |||||| || ||||| Sbjct 14622 TGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCAT-CGCGGCTGGGGAATCCCTCAAG 14564 Query 319872 CTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAG 319931 ||||||||| || || ||||||||||| || ||||| ||||| || || ||||| Sbjct 14563 CTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCACAG 14504 Query 319932 ACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACC 319991 |||||| |||| || || || ||| | || | ||||||||| ||||| | ||||| Sbjct 14503 ACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACCACC 14444 Query 319992 ATATGCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || || | ||||| || Sbjct 14443 GTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 14411 >seq4510 Length=93785 Score = 125 bits (138), Expect = 2e-23 Identities = 558/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| || || | | ||| ||||| | ||||||||||| || | ||| | ||||| Sbjct 47485 GTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 47544 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| ||||||| | || | ||| ||| || |||||| | || |||| | Sbjct 47545 GACGGCTGAGGA-GCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAG---CTCACGG 47600 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | || | || ||||||| | || ||||| | Sbjct 47601 ACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCG 47660 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || || | ||||| || ||||| ||| || ||||| || | Sbjct 47661 TGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCT 47720 Query 229997 TTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTT 230052 | |||| | ||| | |||| | ||| || || || || || | ||||| Sbjct 47721 TCTATGGCTTCCAGATCGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCACTGCTC 47776 Query 230053 ATCGACGCGCTTATTTCCGACGAG--CAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 || ||| || || |||| | | |||| | || | || | ||||||||| | Sbjct 47777 ATTGACACGTACATCAAGGACGCGATCGAGAAGG--ACCATCTCCTGCGTGCCATTGAGA 47834 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || || ||||| | ||||| | || ||| || || || || Sbjct 47835 CCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTAT 47894 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 | | | || ||||| || | || | | ||| ||||| || | || || || Sbjct 47895 CCTCCTACCCAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 47954 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 ||||||| ||||||||||||| ||| || | ||||| || || | | || | Sbjct 47955 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 48014 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| |||||||||| |||||||| | || | |||| | ||| |||| || | Sbjct 48015 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCA 48074 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAA 230406 |||| | |||||| ||| ||| || | || | |||||| || || || | Sbjct 48075 AGCTGGTCACCAAGCTGCCAGA-GAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTG 48133 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | || | ||||| | ||||| | | || ||| | || ||||| |||||| ||| Sbjct 48134 ATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCTGC 48192 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---TA 230522 || ||| | |||||||| || ||||| || ||||| | | | |||||| | Sbjct 48193 CCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTC 48252 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | ||| | ||| || |||||||||| |||| | ||||| | || || || ||||| Sbjct 48253 CAAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGG 48309 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||| ||||| |||||||| Sbjct 48310 CAAGACCAACTTTTTCGAGAAGCGTGT 48336 >seq6011 Length=24561 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 || || ||||| ||||| | ||||| || ||||||||||||| ||| | || || Sbjct 13580 AGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCG 13639 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||| ||| ||| || ||||| ||||| || ||| | ||||| |||| Sbjct 13640 AACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13699 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA 281915 || ||||| ||||| || | ||||||||| || ||||| ||| || | || Sbjct 13700 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13759 Query 281916 TAACCACTGAACTGTGCTACCTT 281938 || ||| |||||||| ||||| Sbjct 13760 TAGCCAGCCAACTGTGCCACCTT 13782 >seq2791 Length=80716 Score = 86.0 bits (94), Expect = 1e-11 Identities = 198/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 |||| |||||||||||| | | ||| || ||| |||||||| ||||| | | || Sbjct 14614 CAGTAACGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACC 14673 Query 281795 AAACTGACCCTCCGGCAACA--ACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 ||| ||||| ||| ||| | | | | ||||||| ||| ||| | ||||| ||| Sbjct 14674 AAATTGACCTGACGGGTACAGTAGCGGC--AGGTTATTGGACCCCACGAAGTCCTGCGCC 14731 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | |||||| || ||| || | ||| | || ||||||||||| || |||| || | Sbjct 14732 ATGTTGACAATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTC-ACT 14790 Query 281913 ACA-TAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGA---AAGC 281968 || |||||| | ||| || |||||||| || || | |||||||| | |||| Sbjct 14791 GCAGTAACCAGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGC 14850 Query 281969 GCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGG 282019 | || | | || || || || || ||||| |||||| || || || || Sbjct 14851 G-AACAGA--ACCTTCCGCTGCGAGATCTTGAGACCATCGACCACCGATGG 14898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057736052182070