Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4510 329 3e-85 seq2906 161 1e-34 seq1842 134 1e-26 seq2806 127 2e-24 seq3968 114 1e-20 >seq4510 Length=93785 Score = 329 bits (364), Expect = 3e-85 Identities = 440/603 (73%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 47462 GAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTAC 47521 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || || |||||||| || |||||||| | |||||| | ||||| || || | | | || Sbjct 47522 AAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAG 47581 Query 116710 CGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| ||| ||| | ||||||||||| || ||||||||||||||||| ||||| Sbjct 47582 -GACTGG-AGCAAGCTC-ACGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTC 47638 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||| ||||| ||||| |||||||| ||| | | ||| | || ||| Sbjct 47639 TTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTG 47698 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| ||||||| || |||||||| ||||| ||||||||||| |||||| | |||||| Sbjct 47699 CAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCG 47758 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 || | || || ||||| ||||||||| | || |||||| || | | Sbjct 47759 GAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAAGGACCATCTC 47818 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| ||||| || || || |||| ||||||| | ||||| || ||| Sbjct 47819 CTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGG 47878 Query 117008 ATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || || | | || ||| | ||||||||| |||| ||||| || || || || Sbjct 47879 TGCGACCCGC-GTGTATCCTCCTACCCAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGG 47937 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||||| |||||| |||| | |||| |||||||| ||||| |||||||||||||| Sbjct 47938 CATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCC 47997 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||| ||| |||||||||||| | |||||||| |||| ||||| || Sbjct 47998 CGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGC 48057 Query 117187 CTG 117189 ||| Sbjct 48058 CTG 48060 >seq2906 Length=21328 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| ||||||| || | Sbjct 18461 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 18402 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||||| ||||| ||||| ||||| | ||| Sbjct 18401 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 18342 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 18341 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 18282 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || ||| |||| || | || || ||| Sbjct 18281 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGC 18228 >seq1842 Length=4307 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| ||||| ||| ||||||| || | | Sbjct 4299 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 4240 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || ||||| || | ||||| Sbjct 4239 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCA 4181 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| |||||||| | ||||||||| Sbjct 4180 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAA 4121 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || ||| |||| Sbjct 4120 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCG 4085 >seq2806 Length=38520 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| ||||||| || | | Sbjct 7489 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7430 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 7429 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 7370 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 7369 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 7310 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 7309 ATCCAGAAGG 7300 >seq3968 Length=9653 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| |||| || | ||||| || |||||||| | |||||||| || | |||| || Sbjct 9652 TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCG 9593 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| |||| ||||| || | ||||||||||||||||||||| | | Sbjct 9592 CTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTA 9533 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || || ||| |||| || | ||||| Sbjct 9532 CACTCCACCTGGTGCTGCGTCTGCGTGGCGG 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515177409282640