Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4581 280 1e-70 seq1842 150 2e-31 seq2906 138 1e-27 seq2806 113 4e-20 seq3968 91.5 1e-13 >seq4581 Length=10530 Score = 280 bits (310), Expect = 1e-70 Identities = 1213/1896 (64%), Gaps = 45/1896 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || |||| || ||| ||| | || |||||||| Sbjct 5685 CTTGTCCACAGTGAACTGGATAGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 5626 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||||||| || || ||||||| || | | |||| Sbjct 5625 GGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGTCGG 5566 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||||||||| |||| | || || || || || | Sbjct 5565 GTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCCACGGTCAGCCGA 5506 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | | | | | || ||||| || ||||||||| | | | | || Sbjct 5505 CAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAACATC 5446 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT-TAA 22403 ||| || | || | |||| || || || || | | ||| ||| || Sbjct 5445 ATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAATCTGATTACGTAC 5386 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 | ||| ||| | |||| || | | || || | ||||| ||| || | | Sbjct 5385 TTCCGGCGT-CCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAACAATCG 5327 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | ||| || || || | ||| |||||||| ||| | || |||| ||| Sbjct 5326 TGAA-CTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGAC 5268 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || || || |||||||| || || | ||| |||||| Sbjct 5267 TCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAG 5208 Query 22583 TTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCCCA-----CAG 22635 || | | ||||| || ||| | | | | | || | ||||| ||| ||| Sbjct 5207 TTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGC--CCAGTTCCAAAGCCCAG 5150 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || || || || | ||||||| ||| | || || | || ||| ||||| Sbjct 5149 AT--GAAGGTGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 5095 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 ||| | | |||| ||||| ||||| || || ||||| || || | || ||||| | Sbjct 5094 GCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGG 5036 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG 22813 | | | || || ||||||||||| |||||||||||||| || ||| ||| ||| Sbjct 5035 CAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGG-GCTCTCG 4977 Query 22814 TACGGCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 ||| | || ||| | | |||||| ||||||| |||||| ||||| ||||| || || Sbjct 4976 AACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGG 4918 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 || | || || ||| ||||| | | |||||| | || ||||| Sbjct 4917 ACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGAC 4858 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||| | ||| | || | | || | | ||||| | || Sbjct 4857 CTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACAC 4798 Query 22993 GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTC 23052 || || | |||||| | | || | || || | ||||| || |||||||| Sbjct 4797 ACCGTTTT---CCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTC 4741 Query 23053 GTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAA 23112 || ||||||||||| | | |||| |||| ||||| | ||||| ||||| Sbjct 4740 ATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAA 4681 Query 23113 ATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172 || ||| || || || || | ||||||||||||||| | ||| ||||| Sbjct 4680 GTTCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGT 4621 Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTA 23232 ||| | ||| | || | ||| || ||||| |||||||| | ||| ||| Sbjct 4620 CTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT-GTCTTACGCG 4562 Query 23233 CCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | ||||| | ||||||||||| |||| || ||||| || | || | || ||| Sbjct 4561 CACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGT 4502 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGC 23348 ||| || || | || | ||||| | | ||||||| | | |||| || || | Sbjct 4501 ACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACTC 4445 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || ||||| || | ||| || ||||| |||| ||||||||||| | || Sbjct 4444 TCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT 4385 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | || ||| |||||| || ||||| || || |||||||| || ||||||||||| | Sbjct 4384 CATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCA 4325 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||| | || |||| |||| | |||| |||||||| || || || || ||||||| Sbjct 4324 AGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGT 4265 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||| |||| | | ||| || | | ||||| || | |||| | || ||| | Sbjct 4264 CGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCG--TTCG--TGCCGCGG 4209 Query 23589 TCGAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | || || || || | |||||| | || ||| || || || || |||| Sbjct 4208 ATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTA 4149 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || || |||||||| || || |||||||| |||||||| || ||| || | | Sbjct 4148 GAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATA 4089 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 || | | |||||| ||||||| || | ||||| |||| ||| || || ||| Sbjct 4088 GCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGG 4029 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||||||| ||| | | |||||| || | |||||| || | |||| | ||| Sbjct 4028 GTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATG 3969 Query 23825 TC-CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || |||| ||| || || | || || |||| ||||| | || || | ||| ||| Sbjct 3968 TCGCTCT-TGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCAC 3910 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||| || | ||| || || || | | ||| || || || || ||||| || Sbjct 3909 CTTGCCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTA 3850 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| || ||||| | |||||||| ||||| Sbjct 3849 CTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTCAA 3814 >seq1842 Length=4307 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || || ||| ||||||| || ||||| Sbjct 4300 CATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTC 4241 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| || ||||||||||||| | ||||| ||||| Sbjct 4240 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCA 4181 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 4180 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAA 4121 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || |||||||| ||||| || Sbjct 4120 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCT 4088 >seq2906 Length=21328 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| ||||||| || ||| Sbjct 18461 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 18402 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| ||||||||| || | ||||| ||| Sbjct 18401 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 18342 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| ||| || || || Sbjct 18341 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 18282 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || || ||||| || | ||| | || ||| ||||| Sbjct 18281 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGAAG 18222 Query 31426 CG 31427 || Sbjct 18221 CG 18220 >seq2806 Length=38520 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| |||| ||||| || ||||| ||||||| || || Sbjct 7493 AATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 7434 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 7433 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGA 7374 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 7373 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 7334 >seq3968 Length=9653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | ||||| |||||||||||| | || ||||||||||| ||| |||| Sbjct 9636 GGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGA 9577 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||| || || ||||| || || || || || || || ||||| || Sbjct 9576 GGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACACTCCACCTGGTGCT 9517 Query 31405 TAGACTGAGGGGCGG 31419 | ||| | ||||| Sbjct 9516 GCGTCTGCGTGGCGG 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445730242772880