Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4510 165 1e-35 seq4581 156 5e-33 >seq4510 Length=93785 Score = 165 bits (182), Expect = 1e-35 Identities = 388/580 (67%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||||| |||||||| | ||| || | ||||| || || | || Sbjct 48060 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 48001 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 48000 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 47941 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33755 || ||||| || ||||| || || | || | |||| || || ||| | || Sbjct 47940 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTC- 47882 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 47881 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 47824 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | ||||| || || || | || || | || || || || | || || Sbjct 47823 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 47764 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 47763 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 47704 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||||||||| | | || |||| || || || || ||||| || || ||||||| Sbjct 47703 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 47646 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 |||| || || || | || || || || || | | |||| || || || ||| Sbjct 47645 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCC 47586 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || |||| || | | || | || || | ||||| || || ||||| || | Sbjct 47585 AGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 47526 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 | || ||||| | ||| | || || | || || ||||| Sbjct 47525 TCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47486 >seq4581 Length=10530 Score = 156 bits (172), Expect = 5e-33 Identities = 705/1110 (64%), Gaps = 8/1110 (1%) Strand=Plus/Minus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || || || || ||||| ||||| || | || | |||| |||||| || || | || Sbjct 5027 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4968 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 4967 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4908 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4907 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4848 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62927 || | || || |||||||| || | |||| | | || || || | | Sbjct 4847 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4788 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 |||||||| || || ||||| |||| || ||||| || ||||||| | || Sbjct 4787 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4728 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 || | || | || ||| | || || | ||| || || || || || ||||| Sbjct 4727 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4668 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4667 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4608 Query 63108 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63165 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 4607 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4550 Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 | ||||| ||||| ||| ||||| || ||||| | || || | |||| Sbjct 4549 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4490 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 4489 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4430 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 |||| | ||| || || ||| | || | | | || ||| || || |||| Sbjct 4429 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4370 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4369 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4310 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4309 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4250 Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525 |||| || ||||| ||||| || || || || ||| ||| |||| | |||| | Sbjct 4249 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4190 Query 63526 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4189 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4132 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||| ||||| || ||||| || || ||||| ||| | ||| ||||| Sbjct 4131 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4072 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||||| || |||| | || || || || || | ||||| | |||||||| || | Sbjct 4071 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4012 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 4011 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3952 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGG 63793 || || ||||||| | ||| ||||| || Sbjct 3951 TAACGCTACACGCAGAATCATTTGCTGCGG 3922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629766513919920