Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4510 187 4e-42 seq4581 181 2e-40 >seq4510 Length=93785 Score = 187 bits (206), Expect = 4e-42 Identities = 395/581 (68%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 48060 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 48001 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 48000 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 47942 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| ||||| || || || || || | || | |||| || || ||| | || Sbjct 47941 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTC 47882 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 47881 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 47825 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | | ||||| || || || | || || | || || || || | || || Sbjct 47824 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 47765 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 47764 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 47705 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| | | || ||||| || || || || ||||| || ||||||||| Sbjct 47704 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 47647 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || || || || ||| |||||| || || || || Sbjct 47646 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 47587 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 47586 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 47527 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| | || || | || || ||||| Sbjct 47526 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47486 >seq4581 Length=10530 Score = 181 bits (200), Expect = 2e-40 Identities = 720/1126 (64%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || || ||||| || ||||| || | || | |||| |||| || || | || Sbjct 5027 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4968 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4967 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4908 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4907 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4848 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT 79599 || | || || |||||||| || | ||| | | || || || | | Sbjct 4847 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4788 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| || ||| ||||| |||| || || || || ||||||| | || Sbjct 4787 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4728 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | || | ||| ||| | ||| || | || || || || || || ||||| Sbjct 4727 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4668 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4667 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4608 Query 79780 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTC 79837 |||| || || ||| | | || |||| || ||| | || | | || || || Sbjct 4607 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4550 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 | ||||| | | ||| | ||| ||||| || ||||| |||| | |||||| Sbjct 4549 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4490 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||||| ||||| | ||| ||||| |||| ||| |||| ||||| ||||||| Sbjct 4489 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4430 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| | ||| || || ||| | || | || | ||| ||| || || |||| Sbjct 4429 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4370 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4369 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4310 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 ||| || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4309 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4250 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||| || ||||| || || || | || || || ||| ||| ||||| | |||| | Sbjct 4249 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4190 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4189 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4132 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||| || || || |||||||| || ||||| ||| | ||| ||||| Sbjct 4131 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4072 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 4071 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4012 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || | |||| || | ||||||||| | || || | || || | | || || || Sbjct 4011 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3952 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 3951 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718210539421960