Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4581 185 1e-41 seq4510 156 6e-33 >seq4581 Length=10530 Score = 185 bits (204), Expect = 1e-41 Identities = 723/1127 (64%), Gaps = 10/1127 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || || ||||| || ||||| || | || | |||| |||||| || || | || Sbjct 5027 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4968 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | ||| || ||||| || || | || || ||||||||||| || || | || | | Sbjct 4967 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4908 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4907 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4848 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 || | || || |||||||| || | ||| | | || || || | | Sbjct 4847 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4788 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 4787 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4728 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || | ||| ||| | || || | ||| || || || || || ||||| Sbjct 4727 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4668 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| |||| || ||||| || || || || || || || |||||||||| Sbjct 4667 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4608 Query 71863 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTC 71920 |||| || || ||| | | || |||| || ||| | || | | | || || || Sbjct 4607 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4550 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGA 71979 | ||||| | | ||| | ||| ||||| || ||||| ||| | || | |||||| Sbjct 4549 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCA-GCACTCGTACAGACCAGGA 4491 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 ||| || ||||| | ||| ||||| |||| | | |||| ||||| |||||| Sbjct 4490 GCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGA 4431 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| | ||| || || ||| | || | || | ||| ||| || || ||| Sbjct 4430 TCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTC 4371 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4370 TTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAAC 4311 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 ||| || || ||| ||||| || | || | ||| |||| ||| | || | | Sbjct 4310 GAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGC 4251 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 ||||| || ||||| || || || | || || || ||| ||| ||||| | |||| Sbjct 4250 AACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCG 4191 Query 72280 CGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || | ||| | |||| ||| || || || ||| ||||||||| | |||||| Sbjct 4190 CGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATT 4133 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 | |||| || || || |||||||| ||| |||||| ||| | ||| ||||| Sbjct 4132 GCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAG 4073 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 4072 AAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA 4013 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | || | |||| || | ||||||||| | || || | || || | | || || | Sbjct 4012 ACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGC 3953 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||| ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 3952 CTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3906 >seq4510 Length=93785 Score = 156 bits (172), Expect = 6e-33 Identities = 388/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| ||||| || | ||| || | ||||| || || | || Sbjct 48060 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 48001 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || |||||||| || || ||| || || || || ||||| Sbjct 48000 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 47942 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 42237 ||| ||||| || || || || || | || | |||| || || ||| ||| Sbjct 47941 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTC 47882 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 47881 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 47825 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | | ||||| || || || | || || | || || || || | || || Sbjct 47824 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 47765 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| |||||||| ||||| || || ||||| || | ||||||| Sbjct 47764 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 47705 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| | | || ||||| || || || |||||||| || ||||||||| Sbjct 47704 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 47647 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || || || | | |||| || | || || Sbjct 47646 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 47587 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | | || | || || ||||||| || || || || || Sbjct 47586 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 47527 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| | ||| | || || | ||||| ||||| Sbjct 47526 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 47486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671084762221640