Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4510 190 3e-43 seq4581 123 4e-23 seq1212 104 3e-17 seq2408 100 4e-16 >seq4510 Length=93785 Score = 190 bits (210), Expect = 3e-43 Identities = 601/894 (67%), Gaps = 48/894 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||||| ||||| |||| | || || | ||| | |||||||| || || |||||||||| Sbjct 47483 CTGTTCCCCATTCAGGAA-CACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTT 47541 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| || ||| |||| || || || | |||| | || ||| | | | | Sbjct 47542 CTGGACGGCTGAGGAGCTCGACCTTGTGCACG-ACCTCAAGGACTGGAGCAAGC---TCA 47597 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | |||||| | || || |||| | | |||||||| || | | || || | Sbjct 47598 CGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTA 47657 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 |||| ||||| || || | || || || ||| || || | || |||| || Sbjct 47658 TCGTGAACGAGAACTTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-TC 47714 Query 125231 GT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 || |||| || || ||||| ||| ||||||||| | |||||||| | ||||| | Sbjct 47715 GTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGC 47774 Query 125290 TGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT 125344 | ||||||| |||||| ||||||| || | || ||| ||| | || || Sbjct 47775 TCATTGACACGTACATCAAGGACGCGATCGAGAAGG---AC-CAT-CTCCTGCGTGCCAT 47829 Query 125345 CGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-C 125402 || || | || | | | ||| || |||||||| |||| | |||| ||| | Sbjct 47830 TGAGACCATCCCTTGTGTCACG-AAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGC 47888 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | | || || ||| | || | ||| |||| ||||| || || || ||||||||||| Sbjct 47889 GTGTA-TCCTCCTACCCAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTC 47947 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 47948 TCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAG 48006 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || ||| ||||||||| | ||| ||||| ||| || | Sbjct 48007 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTT 48066 Query 125582 GTTTCGCAACTATCTGCGTC-CCGAG-TGC-AGATCCAGCGATGAAAAGGTCATCAACAT 125638 || ||| ||| ||| || || ||| ||| ||| || | | | |||| | Sbjct 48067 GTACTCCAAG---CTG-GTCACCAAGCTGCCAGAG--AGCCGTGTACACGAGATCAT--T 48118 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCA 125697 || || || ||| ||| || || |||||| | || || || || || ||| Sbjct 48119 CGTGAC----GCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGC- 48173 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||| ||||||| || |||||| ||||||| ||||| ||||| || ||||| | Sbjct 48174 TGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGC 48233 Query 125758 TGTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 | ||| | ||| | | | |||||| ||| |||| ||||| || ||||| | ||| | Sbjct 48234 TCTACTCGCTTGGTGTGTC-CAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 48292 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || | || ||||||||||||||||||||| || |||||||| Sbjct 48293 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 48346 >seq4581 Length=10530 Score = 123 bits (136), Expect = 4e-23 Identities = 317/475 (67%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| ||||| || || || | || |||| || ||| | Sbjct 4319 TCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 4378 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 | ||| | |||| | ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 4379 GTAATGA-GCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTC 4437 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | |||| | ||||| | | || ||| || | || ||| Sbjct 4438 ATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGT 4497 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 |||| ||| ||||||||||| |||||||| || ||| |||||| | || || Sbjct 4498 CTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGA 4557 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGG 97206 || ||| |||| | || | || | | |||||| || ||| | ||| |||||| Sbjct 4558 CGTGCGCGTAAGAC-AATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGAC-GCTCAGA 4615 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAAC 97266 | ||||| ||| || | ||| ||||||||||| | | || ||||| || || | Sbjct 4616 TTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAATCAGC 4675 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 ||||||| || ||| | ||| | ||| ||| | | |||||| | || | Sbjct 4676 AGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCAC 4735 Query 97327 CGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| |||||| ||| |||| || || ||||| | |||||| || Sbjct 4736 CCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA 4790 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 98015 CATCCCGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 ||| ||||| || ||| | |||| |||||||| || |||||||| | | || | || Sbjct 5436 CATTCCGGATGATGTTAAGGAGAAG-TACAAGACGGTGTGGGAGAT--CAAGCAGAAGGC 5492 Query 98074 TGATC--GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 || || || || | || ||| | || | || || ||||||||| ||||| || | Sbjct 5493 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 5552 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 || | ||||| || || |||| |||| || || ||||||||||| ||||| || Sbjct 5553 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 5612 Query 98192 GGGCCTCAAGACGGGCATGTACTA 98215 ||| |||||||| ||||||||||| Sbjct 5613 GGGACTCAAGACCGGCATGTACTA 5636 >seq1212 Length=21786 Score = 104 bits (114), Expect = 3e-17 Identities = 217/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 10343 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 10402 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| |||||| ||||| || || || Sbjct 10403 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCAGAGTAGGGCTGCACGTT 10462 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 10463 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 10519 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 10520 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 10577 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | ||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 10578 TCGGCATACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 10637 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 10638 TTCTCCGAAGCGATGAGCTC 10657 >seq2408 Length=74190 Score = 100 bits (110), Expect = 4e-16 Identities = 262/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 71788 GGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 71847 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || ||||| || || | ||||| | ||| ||| | Sbjct 71848 ATGCATG-CAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAGG-TGATTCACAAGC 71905 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | |||| || ||| | ||||| || || ||| | Sbjct 71906 TGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCA 71965 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | ||||| || || || || ||| |||| || ||||| ||| | | || || Sbjct 71966 ACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGC-CAGTTCTACGTTGCCAACGGGGAA 72024 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | ||||||||||| || || || || || |||||| Sbjct 72025 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 72084 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | || |||| || | || || || ||| | |||| Sbjct 72085 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 72144 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | ||| || |||||||| |||||||| Sbjct 72145 TTCATCCACGTTATCGGCGACGCACACGTGTA 72176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740999090835640