Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2906 105 2e-17 seq1842 89.7 1e-12 >seq2906 Length=21328 Score = 105 bits (116), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | ||||| || || || || || Sbjct 18262 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 18321 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || ||||| || || |||||||| || ||||| Sbjct 18322 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTG 18381 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | | || || || || || || || || ||||| || ||||| || Sbjct 18382 -ACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 18440 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 || || || ||||||||||| ||| Sbjct 18441 CTTGACGAAAATCTGCATTTTCTGT 18465 >seq1842 Length=4307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || | |||||| || || || || ||| Sbjct 4103 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 4162 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || ||||| || ||||||||||| ||| || Sbjct 4163 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGC-TT 4221 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || || || || || || ||||| ||||| || || | || Sbjct 4222 CACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGT 4281 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4282 CTTCACGAAGATCTGCAT 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151302672377212