Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2293 114 1e-20 >seq2293 Length=3558 Score = 114 bits (126), Expect = 1e-20 Identities = 189/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||||||| || || ||||| ||||| | | || || || | | ||||||| Sbjct 1977 CACGCCCGTGCTACCAAAGCCGCCGGCGCCACGAGCAGTCTCCTCGATCTCCTCCACCTC 2036 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || ||| || | ||| ||| ||||| || | ||||| || ||| Sbjct 2037 CTGGACCTCCGGGTACTCGATCTTTTCGAGGATGAGCTGAGCCACACGGTCCCCGCGCTT 2096 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||||| | || |||| ||||||||| | |||||||||||||||||||| Sbjct 2097 GACTGGGAAATCCTCGTT--CGAATGGTTGAACAGAATGACGCCCACGTTGCCGCGGTAA 2154 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||||| || || || |||||| ||||||||| | ||| || || || ||||| Sbjct 2155 TCAGCGTCAATGACACCAGCGCCCGTGTCGATGAACTTCTTCCATGCGAGACCTGAGCGA 2214 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 || |||||||| | ||||| || ||||||| Sbjct 2215 GGTGCCACGCGTGCATAGCAGCCGTCGGGAA 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430020389282168