Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2408 127 1e-24 >seq2408 Length=74190 Score = 127 bits (140), Expect = 1e-24 Identities = 329/493 (67%), Gaps = 15/493 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || ||||| || || | |||||| ||||| ||||| || | | |||| Sbjct 72209 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 72150 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG--AGGAGAAAGT 25530 | ||||| || |||| ||| || || || | || | || || |||| || || || Sbjct 72149 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 72092 Query 25531 AGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGA 25590 ||||||| ||||| || || || || | |||||||| || || | |||||| | |||| Sbjct 72091 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCC-GATCGCTGGTACATCTGA 72033 Query 25591 CACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCT 25650 ||||| | || ||| | ||||| ||||| || | ||| ||| || || || || Sbjct 72032 CACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCC 71973 Query 25651 ATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT- 25709 || | | || |||||||| || ||| | || | | ||| || || Sbjct 71972 ATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTC 71913 Query 25710 GTCC----CTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 || | || | | ||| | || | ||||| ||||| || || | ||||| Sbjct 71912 GTACGCAGCTTGTGA-ATCACCTCTGCT----AGCTGGTCCACACCTTGGCCAGTGTAGT 71858 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 |||| |||||||||||||| || || || | | ||||||||| ||||| ||||||| Sbjct 71857 CTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTC 71798 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||||||| | |||| | || | || | |||||| | | || | || |||| Sbjct 71797 CAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCAT 71738 Query 25886 TGGCGTCCCAGAT 25898 || ||||||| || Sbjct 71737 TGCCGTCCCAAAT 71725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340110700324197