Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1973 168 1e-37 seq1876 145 1e-30 seq1868 80.6 4e-11 >seq1973 Length=94046 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 73014 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 72955 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 72954 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 72895 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 72894 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 72835 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 72834 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 72775 Query 16672 CCG 16674 ||| Sbjct 72774 CCG 72772 >seq1876 Length=140336 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || || |||||||| || ||| Sbjct 98574 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCATC 98633 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || | ||||||| |||| Sbjct 98634 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACC 98693 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 98694 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGAG 98753 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || ||||||| | || || || | || ||||| ||| Sbjct 98754 CACGCCCGCCGTAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 98813 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 98814 CGCACCCTTTACGGCTTCGG 98833 >seq1868 Length=7727 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 16438 GCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||||||| |||| ||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 376 GCGTCATCGCAAGAT-TCTTCGAGACAACATACAAGGCATCACTAAGCCAGCGATTCGAC 434 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || |||||||| | ||| || || |||| | |||||| | | |||| || | Sbjct 435 GCCTTGCTCGTCGGGCTGGTGTGGTTCGCATCTCCGTCTTGGTCCACCACGAGACGCGCG 494 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 || ||| || || | || | || || || || || |||| | ||||||| Sbjct 495 CAGTGCTGAGGACATTTTTGTCGAGTGCCATTCAAGACGCGATCACCTATTCGGAGCACG 554 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || ||||| |||| ||||| || | || || | ||||| ||||| || Sbjct 555 GACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCGCTCAAACGCCAAGGTCG 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069267061877