Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4510 172 7e-38 seq4581 167 3e-36 >seq4510 Length=93785 Score = 172 bits (190), Expect = 7e-38 Identities = 312/451 (69%), Gaps = 13/451 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 48060 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 48001 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 48000 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 47941 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33477 || ||||| || ||||| || || | || | |||| || || ||| | || Sbjct 47940 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACACGCGGGTC- 47882 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 47881 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 47824 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| || || || | || || | || || || || | || || Sbjct 47823 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 47764 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 47763 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 47704 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| | | || |||| ||||| || || ||||| || |||||||||| Sbjct 47703 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 47646 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAA 33746 |||| || || || | || || || || || Sbjct 47645 CTGCGAAGAAGGCGAGCACGTGCTTGATGAA 47615 >seq4581 Length=10530 Score = 167 bits (184), Expect = 3e-36 Identities = 717/1126 (64%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 5027 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 4968 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 4967 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4908 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 4907 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 4848 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62876 || | || || |||||||| || | |||| | | || || || | | Sbjct 4847 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 4788 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 4787 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 4728 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | || | || ||| | || || | ||| || || || || || ||||| Sbjct 4727 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTC 4668 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 4667 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 4608 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63114 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 4607 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 4550 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 | ||||| | ||||| ||| ||||| || ||||| | || || |||||| Sbjct 4549 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 4490 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 4489 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 4430 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 4429 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 4370 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 4369 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 4310 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 4309 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 4250 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 |||| || ||||| ||||| || || || || ||| ||| ||||| | |||| | Sbjct 4249 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 4190 Query 63475 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 4189 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 4132 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||| ||||| || || ||||| || ||||| ||| | ||| ||||| Sbjct 4131 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGA 4072 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 4071 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 4012 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 4011 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3952 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 3951 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 3906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622896671195240