Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4581 306 1e-77 seq2408 96.9 9e-15 >seq4581 Length=10530 Score = 306 bits (338), Expect = 1e-77 Identities = 1060/1639 (65%), Gaps = 55/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | ||| ||| |||||||| Sbjct 4015 TTCACGCACGCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCT 4074 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||| |||| || || || ||||| || | ||||| || ||| | Sbjct 4075 TGTTTCCTATTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAA 4134 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 4135 TGCGCCTGTATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCC 4194 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| || || | | |||||| | ||| Sbjct 4195 ACTAACAGCTACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGT 4254 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| |||||||| || |||| Sbjct 4255 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTC 4314 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| || ||||| | || ||||| || || || || || ||| Sbjct 4315 GCTATCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 4374 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||| || || || ||||| |||| | Sbjct 4375 CACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTC 4434 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| | || || || ||||| ||| Sbjct 4435 TTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCT 4494 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | || ||||| || |||||||| || ||| Sbjct 4495 GGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAA 4554 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || ||||||||||| ||| ||| |||| ||||| || ||| | || | ||| Sbjct 4555 GGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAG 4614 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| ||| |||| ||| | ||||| || | ||||||||||| || ||| Sbjct 4615 ATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAATCAG 4674 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| || | ||||| || | |||||| |||| ||| | || || ||||| | Sbjct 4675 CAGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCA 4734 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| ||| || || || ||| | ||||| | ||||| || |||||| || | Sbjct 4735 CCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGAAAAC 4794 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT----AACCT-ATCATGCTACTTGCAATC 364381 ||| || ||| || || || ||||| || || | |||| || |||| | Sbjct 4795 GGTGTGTTCGACTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGC-----GCAACC 4849 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATG 364440 || ||||||| |||||| || |||||||| || | || || || | || || ||| Sbjct 4850 TCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG-TCCAACATG 4908 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 || ||||| || |||||| |||| || ||||| || || || | || || | | || Sbjct 4909 CGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAAC 4968 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || || || | ||||||| | || ||| | ||||| || || || || Sbjct 4969 TACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTAC 5028 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || ||| | ||| ||| | ||| || | | | |||| Sbjct 5029 TTTGCTGCCATGGAGACGTCG------ATGGAGATTGCCACGG---AATTGGGTCCTTAC 5079 Query 364621 GAGGGGTCCC----CTCTTTCGC-----AGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 ||| || || |||| || |||| | |||||||| || | ||| ||| Sbjct 5080 GAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTC 5139 Query 364672 ACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 || | |||||| | |||||||||| | ||| |||| | || || ||| Sbjct 5140 ACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATTAAACACGGT 5199 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 || ||||| || | || |||||||| || || || || || |||||||| || Sbjct 5200 CTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGC 5259 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCG 364846 |||||||||| |||| || ||||| | ||| | || || || || | | | Sbjct 5260 AACAACGAGTCTATCGAGCC--TTACACGTCCAACATGTACAACCGTCGTGTGTTGGCTG 5317 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || || | ||||| ||||| || | ||||| ||| ||| | ||| | || Sbjct 5318 GTGAGTTCACGATTGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTG-- 5375 Query 364907 GTGACAGCATGAAGAACTATATCA-----TCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || |||| || |||| | | | ||| || |||||||| || Sbjct 5376 --GAC-GCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAA-GGTCA 5431 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA 365019 |||| |||| || ||| | ||| | ||||| || || ||||| || || || || Sbjct 5432 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGA 5488 Query 365020 A--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || | | || || |||| || || || |||| |||||| ||||| |||||||| | Sbjct 5489 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 5548 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||| | | || || | ||||| || |||||||| || |||| |||| Sbjct 5549 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 5608 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 5609 AGAAGGGACTCAAGACCGG 5627 >seq2408 Length=74190 Score = 96.9 bits (106), Expect = 9e-15 Identities = 346/532 (65%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAGCAAAAA 111417 ||| || || |||||||||||| | ||| |||| ||| | ||| ||||||| ||| Sbjct 71658 CGAGGAGCTACTGTGGTTTATTAGTGGAGACACAAGTGCCCAC--ACTCTGCAGCAGAAA 71715 Query 111418 -ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC 111476 || | | |||||||| || |||||||| || || | ||| ||| || || Sbjct 71716 GATATTCATATTTGGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAG 71775 Query 111477 GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || | || || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 71776 GATCGGGAGGTTGGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCC 71835 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGT 111595 | |||| |||||| | || | || || || || || |||| || Sbjct 71836 AAGTACACGGACATGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAG-GT 71894 Query 111596 CATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACC 111654 ||| | ||| | | || || || ||| || || ||| | || || ||||||| Sbjct 71895 GATTCA-CAAGCTGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACC 71953 Query 111655 CAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTAC 111714 | | | | | ||||| || || || || || | | |||||||| || || Sbjct 71954 CGGCCGATCTCAACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTG 72013 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 | ||||| | || || || ||||| |||||||| || || || |||||||| || | Sbjct 72014 CCAACGGGGAATTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGC 72073 Query 111775 CGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCA 111834 | || || ||||| || ||||| || || || | | | || || | || || | Sbjct 72074 CTTTCAACATTGCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAA 72133 Query 111835 AACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 |||| || || ||||| ||||||||||| || || || || ||| ||||| Sbjct 72134 AACCTGGCGAGTTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCA 72185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303245238774398