Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1842 154 1e-32 seq2906 152 5e-32 seq4581 149 6e-31 seq3968 129 6e-25 seq2806 104 2e-17 >seq1842 Length=4307 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 4073 CCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4132 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 4133 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 4192 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||| | | || | | || | | ||| | | Sbjct 4193 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 4252 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||||| ||| || ||||| | || || ||||| ||||||||| Sbjct 4253 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 4300 >seq2906 Length=21328 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 18232 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 18291 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 18292 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 18351 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 18352 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 18411 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 18412 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 18458 >seq4581 Length=10530 Score = 149 bits (164), Expect = 6e-31 Identities = 711/1106 (64%), Gaps = 48/1106 (4%) Strand=Plus/Minus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 ||||| || |||||||||||||| |||| ||| |||||| | || || | ||||||| Sbjct 5324 AACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGACTCG 5265 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || ||||||||||| ||||| || | || || |||||| || |||| | || || Sbjct 5264 TTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAGTTA 5205 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGC---GAAGTC 145246 || || ||||| || ||| ||| || ||||| | |||| | ||| ||| || | Sbjct 5204 CGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGTTCCAAAGCCCAGATGAA 5145 Query 145247 GGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAG 145306 || | ||| ||||||||||| |||| || || |||| ||||| || ||| || || Sbjct 5144 GGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAAC 5085 Query 145307 GAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAAT 145364 | |||| | ||||| | |||| | ||| || | || ||||| || | || | Sbjct 5084 GTCTCGTAA-GGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGT 5027 Query 145365 AAATTGTCTCGGCAATTTGCCTGTTGA--GCAGCATCGCTTCATCGCTCTCGTACGGCAT 145422 | || |||||| || | | |||| | || | |||| ||||||| ||| Sbjct 5026 AGATCGTCTCGAAGATGTTCTTGTTCAATTCACGA--GCTTGCGGGCTCTCGAACGCGTA 4969 Query 145423 GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTT 145482 | || || | || ||||| || || ||||| | || | || ||||| ||||| Sbjct 4968 GTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCG 4909 Query 145483 CATGTTGCTCATCCTCGCCGACTCGATAGGAT-ATCGATTACGGTCGATAATTTTATTCA 145541 ||||||| | | | ||| | | ||||| || | | || |||||| | || || | Sbjct 4908 CATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGAC-GTCGATGACCTTGTTGA 4850 Query 145542 AGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGT 145601 ||| ||| | ||||| | | || | | |||| ||| | | | | Sbjct 4849 GGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTT 4790 Query 145602 CAACGACCACA--CAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC 145659 | || | || | |||| || | |||||||| || || |||||| ||| || Sbjct 4789 CCACAAACATAGGCAGC--------GCCACAGACGCCAAGTTGCACACTGCCACCTCATC 4738 Query 145660 -GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGAT 145718 || | || |||| | | || ||| ||| || ||||| | ||| || |||| | Sbjct 4737 GGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGT 4679 Query 145719 TTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCT 145778 | |||||||| || | ||| |||||||||||||||||| | || | || |||| Sbjct 4678 TCTGCTGATTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCT 4619 Query 145779 CCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTA 145836 | | ||| | || | |||| ||| || | ||| || | || | Sbjct 4618 CAATCTGAGCGTCTAGGATAGCGAAC--CACAGCTGCTGAGCGTTGATTGTCTTACGCGC 4561 Query 145837 GCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCG 145894 || || || | ||||| |||| | |||||| |||||| | || |||| ||| Sbjct 4560 ACGTCCTTCCTTCTCGTACTTTTCATACAGAGCT--TCAAACTCATCGCCCCAGCACTCG 4503 Query 145895 GACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGC 145954 |||| || ||| | ||||||||| | || ||| ||| ||||| | || | | Sbjct 4502 TACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTC 4443 Query 145955 TCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCAATCCT 146012 | ||| || | ||| ||||||||||||||||| | |||||||| |||| |||| || Sbjct 4442 TTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCA--GCT 4385 Query 146013 CAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGT 146068 || ||| ||| ||| || || || | ||| | | ||| ||||||||||| Sbjct 4384 CATTACCGTGGTT---CTTACGCAGATCCAGGA-ACTCGAACACGTCGGCGTGCCACGGC 4329 Query 146069 TCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACC 146125 || | |||| |||| | || || || || || ||||||||||| | || || Sbjct 4328 TCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCC 4269 Query 146126 ATGTTGTTAAAGACGCGCACCATGGG 146151 ||| |||||| || |||| |||||| Sbjct 4268 GTGTCGTTAAACACACGCAACATGGG 4243 >seq3968 Length=9653 Score = 129 bits (142), Expect = 6e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| || ||| Sbjct 9502 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 9561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 9562 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9621 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| ||||| ||| || ||||||| Sbjct 9622 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA 9652 >seq2806 Length=38520 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 7300 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7359 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 7360 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7419 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || | || || || | Sbjct 7420 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 7479 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 7480 AGATCTGCATGA 7491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471974513861760