Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3161 122 2e-22 >seq3161 Length=25874 Score = 122 bits (134), Expect = 2e-22 Identities = 443/686 (65%), Gaps = 13/686 (2%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 15436 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15377 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 15376 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15317 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| || ||||| |||| ||| || || || Sbjct 15316 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15257 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCAT 333552 || || ||||| || || | |||| | || | | || | | || | || Sbjct 15256 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGTCA-CAG 15198 Query 333553 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 333611 | ||||| | | || | |||||| |||| | || ||| || || Sbjct 15197 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTACGA-ACAGTTGGTCAGA 15139 Query 333612 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 333671 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15138 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 15079 Query 333672 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 333728 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 15078 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 15022 Query 333729 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 333788 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 15021 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 14965 Query 333789 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 333848 || ||| || || ||||||||| || |||||||| ||||| || | | | | ||| Sbjct 14964 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTCACG 14905 Query 333849 TCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTG 333908 | | ||| | ||||||| | |||||| ||||| ||| | ||||| Sbjct 14904 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 14845 Query 333909 GTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 333968 || ||||| |||||||| || | | || ||| | | ||| ||||| || || | ||| Sbjct 14844 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 14785 Query 333969 TTCATTTTCCACCCTCCTGAAAGAGT 333994 ||||| ||||| || || ||||| || Sbjct 14784 TTCATCTTCCAACCACCCGAAAGGGT 14759 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| || || |||||||| || || ||||| || Sbjct 14578 GGGGAATCCCTCAAGCTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACC 14519 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 14518 GTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAG 14459 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | ||||| || Sbjct 14458 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 14411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102788306212150