Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4581 242 4e-59 seq4510 158 1e-33 seq2791 95.1 1e-14 seq6011 87.8 2e-12 >seq4581 Length=10530 Score = 242 bits (268), Expect = 4e-59 Identities = 1087/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5637 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5578 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 113715 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5577 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5523 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 5522 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5464 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 5463 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 5404 Query 113836 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5403 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5346 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 |||| ||| || |||| |||||||| || | || | || || |||| | Sbjct 5345 AGATACTTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5286 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5285 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5226 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGGGCG 114070 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 5225 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5169 Query 114071 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5168 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5114 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC--CAA 114180 |||| | ||| || || |||| || |||||||| || ||| | |||| ||| Sbjct 5113 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5057 Query 114181 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 5056 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 4997 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 114297 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 4996 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 4939 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGG 114356 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4938 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4880 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4879 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 4820 Query 114417 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 4819 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 4767 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 ||||||| || ||||| | |||||| |||||||| || | ||| || Sbjct 4766 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 4707 Query 114536 AAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || |||| || || |||||||||| ||||| ||||| |||| || Sbjct 4706 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGATTCGACTTGCGGTTAGCTGCG 4650 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4649 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 4591 Query 114653 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGA 114710 || | || | | | || | | || | | || |||| |||||||||| || | Sbjct 4590 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 4532 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 4531 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4472 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | ||| | ||| |||| || | |||||||||||| || || | ||| || || Sbjct 4471 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4412 Query 114831 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 114889 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4411 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4353 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 114946 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 4352 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4293 Query 114947 CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCA 115006 || |||||| ||||| | || ||| | ||||| || || | ||| || || || || Sbjct 4292 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4233 Query 115007 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGC 115066 | ||| ||| || || || || || ||| |||| | || | || || Sbjct 4232 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4173 Query 115067 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 115126 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4172 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4113 Query 115127 CCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGT 115186 || || || |||||| ||| | || | ||||| || |||| || || | ||| Sbjct 4112 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4053 Query 115187 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATC 115245 || || ||||||||||| || || || ||||| |||| | || | || ||||| || Sbjct 4052 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 3994 Query 115246 GTAGGTCTCCA 115256 ||| ||||||| Sbjct 3993 GTACGTCTCCA 3983 >seq4510 Length=93785 Score = 158 bits (174), Expect = 1e-33 Identities = 395/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 48352 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 48293 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 48292 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 48233 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 48232 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 48173 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | ||| | | |||||| |||| || || || | || Sbjct 48172 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 48114 Query 125991 TGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC---- 126045 | |||| | | | | ||| | | | | || |||| |||| | | Sbjct 48113 TCTCGTGTACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 48060 Query 126046 -GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 ||| || || ||| | ||||||||||| |||||| || |||||||||| ||| | Sbjct 48059 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 48000 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | ||| || || | || || || ||||||||||||| Sbjct 47999 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 47940 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | || |||||| ||||| || | || ||||| | ||||| | || | ||| Sbjct 47939 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAG-GATACACGCGGGTCG 47881 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 47880 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 47821 Query 126284 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 47820 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 47774 >seq2791 Length=80716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 172778 GCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 172837 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 15560 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15619 Query 172838 ACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 172889 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15620 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15671 >seq6011 Length=24561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 237/362 (65%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || || ||||| || ||||||||||||| ||||| || | |||| || || Sbjct 13431 AACCCGTTCCGATACCGTCACTGCCGTTCACGAGCACCATGGGGATAATTGGGATGTACC 13490 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || || || || | | || || |||| || ||| || || | || |||| | Sbjct 13491 ATTCCGGCTCGATGGACTGGCCGTCTTCATTCAGATACTTCAGACAGTCGTTGTCCAAAG 13550 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 171905 |||| |||| |||| | || || || ||||| || || | | | || Sbjct 13551 GATCGTAGATACGGCGAGTAAGCTGCTCTAGGTTGGTGAAAATATAACGAGCACTGGCCG 13610 Query 171906 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATAT 171965 ||||| |||||||| |||||||| || || |||||| ||| || || | ||| | Sbjct 13611 AGTCTTTACCACCCATCAGACGCGTACCGAACTGACCAATCGGGGACAGTAGGTGGATGT 13670 Query 171966 TGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTT--- 172022 |||| || | | |||| | |||| || || || | || | |||||| Sbjct 13671 TGTTGCTGCCAACGAAGTCCTGCGCCATATTCACGATA----CAGCCCTGTAGACTTTGC 13726 Query 172023 -CACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATC 172081 |||||||||||||||| || | || | || || | ||||||||||||||||| | | Sbjct 13727 TCACCGTGATGGTAGGCAGAGTGCTCAGACACGTAGCCAGCCAACTGTGCCACCTTGAGC 13786 Query 172082 TC 172083 || Sbjct 13787 TC 13788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597305147156120