Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2906 134 1e-26 seq2806 116 4e-21 seq1842 105 7e-18 seq3968 91.5 2e-13 >seq2906 Length=21328 Score = 134 bits (148), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || | |||||| || | Sbjct 18243 ACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 18302 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 18303 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTT 18362 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 18363 GTCCTGAATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 18421 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| |||||||| || ||||| || || || ||||||||| Sbjct 18422 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 18462 >seq2806 Length=38520 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 7300 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7359 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| |||||| || |||| | | | Sbjct 7360 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 7418 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | |||| || ||||| |||| ||||||||| |||||||| | ||||| ||| Sbjct 7419 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7478 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 7479 AAGATCTGCAT 7489 >seq1842 Length=4307 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | || |||||| || || ||||| || ||| || || | Sbjct 4084 ACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC 4143 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 4144 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 4203 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| || | Sbjct 4204 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAA 4262 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | |||||| || ||||| ||||| Sbjct 4263 TGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 4299 >seq3968 Length=9653 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||| |||||| || || ||||| ||| ||| || || | Sbjct 9513 ACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCC 9572 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || | ||||||||||| | || | || ||||| Sbjct 9573 GTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTT 9632 Query 42113 GTCCATGATTTTTTGTTTGA 42132 |||| ||| ||||| |||| Sbjct 9633 GTCCTGGATCTTTTGCTTGA 9652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543168738651760