Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4581 298 5e-76 >seq4581 Length=10530 Score = 298 bits (330), Expect = 5e-76 Identities = 874/1336 (65%), Gaps = 53/1336 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || || || || ||| ||||||| |||||||| Sbjct 4024 GCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTA 4083 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| ||||| ||| ||| | || || Sbjct 4084 TTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGT 4143 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 4144 ATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGC 4203 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| |||| |||||| | |||| ||| | || || || ||| Sbjct 4204 TACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAAC 4263 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | ||||| || ||||| |||| Sbjct 4264 GACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTAC 4323 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||| || Sbjct 4324 TTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAAT 4383 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | ||| | ||| | || ||||| || |||||||| || || || ||||| Sbjct 4384 GAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAG 4443 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||| | || |||||||| ||| ||| || |||| | Sbjct 4444 AGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTAC 4503 Query 94372 GACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || | ||| | | ||||||| |||||| ||||| | | || | Sbjct 4504 GAGTGCTGGGGCGAT-GAG-TTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTG 4561 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || | ||| | |||||||| ||| | |||| ||| | |||| Sbjct 4562 CGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGA 4621 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| ||| | | ||||||| | | ||| |||||| || |||||| || Sbjct 4622 CGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAATCAGCAGAACT 4681 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || |||| | || | ||| ||| | | ||||| || || || || | Sbjct 4682 TGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATG 4741 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || | || ||||| ||| ||| || | ||| | | || ||| || | || Sbjct 4742 AGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTG-GAAA-----AC- 4794 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG- 94728 | | |||||| || | ||| ||| | | || | | || || | Sbjct 4795 --------GGTGTGTTCGA-CTACAAGAGACTGT--ATGAGGTGGTCAAGGTGATCACGC 4843 Query 94729 --AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||||| |||| ||| |||||| |||| || || || | ||||| || || | Sbjct 4844 GCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAGTCCA 4903 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || ||||| ||||| || || |||||||||||| | ||||| ||| | | | | Sbjct 4904 ACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCA 4963 Query 94847 TGCGTCTGCCCTACGACTCTGTCGA-----CGC-GGCGGGT---TTGAATTTGAACATAT 94897 || || || | |||| ||| || || ||||| |||||| | Sbjct 4964 TG---------AACTACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCT 5014 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | || || | | |||||| | || | | | |||| |||| | Sbjct 5015 TCGAGACGATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCA---CGGAATTGG 5071 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 | || |||| |||||| || || || | | | |||| || || ||||||||| | Sbjct 5072 GTCCTTACGAGACGTTCCAGGGCTCTCCGGCCAGTA--AGGGTATCTTCCAGTTCGACAT 5129 Query 95016 CTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 ||||| || | | | || || || | |||||| || ||| | ||| || || Sbjct 5130 GTGGGGCGTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCAT 5189 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||||||||| | ||| ||||||| || || |||||||| || ||||||||||| || Sbjct 5190 TAAACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCA 5249 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| |||||||||||||| |||| || | ||| |||||| |||||||| | || || Sbjct 5250 GATCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGT 5309 Query 95193 GCTCGCCGGGGAATTC 95208 | | || || || ||| Sbjct 5310 GTTGGCTGGTGAGTTC 5325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494683071764440