Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4510 134 1e-26 seq2906 116 4e-21 seq1842 100 3e-16 seq2806 96.9 3e-15 >seq4510 Length=93785 Score = 134 bits (148), Expect = 1e-26 Identities = 492/759 (65%), Gaps = 31/759 (4%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| | || |||||||| ||| || | ||||||| Sbjct 47604 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 47663 Query 52153 ACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || ||| | ||| | | || ||| || | || | || | |||||| | | || Sbjct 47664 ACGAGAACTTGGCCATGAACTTCA-GCAACGAA--GTGCAGGTGCCCGAGGCTCGTTGCT 47720 Query 52210 TTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTG 52269 | ||| || || | ||| ||| | | ||| ||||| | ||| |||||||||| Sbjct 47721 TCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTG 47780 Query 52270 AGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGC 52329 | | || || || | | |||| ||| || ||| ||| | ||| | | | Sbjct 47781 ACACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCC 47840 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA---GAGCGACACCGCCA 52386 | || || || |||||||| |||||| | |||||| ||| | | | || || Sbjct 47841 CTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCT 47900 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | | |||||| || |||| ||||| || || ||| | || || || ||| | Sbjct 47901 ACC---CAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTT 47957 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | ||||||||| | || | | ||| | |||||||| |||| ||| |||| Sbjct 47958 TCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 48017 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || ||||| || ||||||||||||| || ||||| | ||| | || Sbjct 48018 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 48077 Query 52567 GCGTGACCGAAAAATTG-----GATTCGG--ACACGATCCTGAGCATGTTCAAGGAGGCG 52619 || ||| || || || || |||||| || ||| || | | || Sbjct 48078 TGGTCACC---AAGCTGCCAGAGAGCCGTGTACACGA----GATCAT--TCGTG-ACGCT 48127 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 |||| || || | |||||| | | | |||| || || |||||| | || |||||| Sbjct 48128 GTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCTGATTGGTATGAAC 48187 Query 52680 GC-GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | || || |||||| ||||||| ||||| ||||| || |||||| | ||| || Sbjct 48188 TCTGCCCTC-ATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGG 48246 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | ||| || | ||||| || || ||||| | ||| ||| || || || | Sbjct 48247 TGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCA 48306 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||| || |||||||| Sbjct 48307 AGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 48345 >seq2906 Length=21328 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 18232 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 18291 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| |||| |||||||| ||||| || || Sbjct 18292 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 18351 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||| || || | |||| || | | |||| | || |||||| Sbjct 18352 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTG-TCAATGCTGTCCGACGGCTCCAC 18410 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || || || || || || ||||||||||| Sbjct 18411 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 18458 >seq1842 Length=4307 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||||||||| || || || | Sbjct 4106 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCG 4165 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || ||||| ||||| || || || || | Sbjct 4166 AAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACG 4225 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| |||| || | || || || |||| || || Sbjct 4226 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTC 4285 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 4286 ACGAAGATCTGCATG 4300 >seq2806 Length=38520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 7300 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7359 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 7360 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 7418 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||| | || |||||| |||| ||| | || || || |||| || || ||| Sbjct 7419 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7478 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 7479 AAGATCTGCATG 7490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496222146916080