Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4510 259 5e-64 seq2906 152 5e-32 seq1842 123 2e-23 seq2806 122 9e-23 seq3968 104 2e-17 >seq4510 Length=93785 Score = 259 bits (286), Expect = 5e-64 Identities = 425/604 (70%), Gaps = 8/604 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| ||||||||| | ||||| ||||| ||| ||| Sbjct 48061 GCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAG 48002 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||||||||| || || |||||||| |||| | |||| |||||| ||||| Sbjct 48001 ACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAA 47942 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG- 133072 || ||| || || || |||||||||| ||||||||| | | | || | | || || Sbjct 47941 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCTGGGTAGGAGGATACAC-GCGGGT 47883 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 || ||| || ||||| | ||||| | |||| || || || || || ||||| Sbjct 47882 CGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCAC 47823 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | | || ||||| || | | ||| ||||| ||||| || || | Sbjct 47822 GCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGA 47763 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 47762 CCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCA 47703 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 |||||||||| | ||| | | ||| || ||||| ||||| ||||| ||||| | Sbjct 47702 CCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTG 47643 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC--GCTCCCA 133370 |||| ||||| ||||||||||||||||| || ||||||||||| | ||| ||| ||| Sbjct 47642 CGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGT-GAGCTTGCT-CCA 47585 Query 133371 GTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||| | | | | || || ||||| | |||||| | ||||| || || |||||||||| Sbjct 47584 GTC-CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 47526 Query 133430 TTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGT 133489 | |||||||| ||||| || | || ||||| || | ||| || ||| ||||| Sbjct 47525 TCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGT 47466 Query 133490 TTTC 133493 | || Sbjct 47465 TCTC 47462 >seq2906 Length=21328 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 18461 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 18402 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||||| | | | | || | ||||| | ||||| |||||||| |||||| || Sbjct 18401 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAAT-CCCGCCTGA 18343 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||| Sbjct 18342 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTA 18283 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| ||||||||||| || | || || Sbjct 18282 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 18232 >seq1842 Length=4307 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||| ||||| ||| ||||||| ||| | | Sbjct 4299 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 4240 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || || ||||| | ||||| Sbjct 4239 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCA 4181 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| |||||||| | ||||||||| Sbjct 4180 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGACTACAA 4121 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || ||||||||||| Sbjct 4120 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGT 4084 >seq2806 Length=38520 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| |||||||| ||||||| ||| | | Sbjct 7489 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7430 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| |||||||| |||||| ||||| Sbjct 7429 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAAT-CCCGCCTGACCA 7371 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 7370 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 7311 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 7310 CATCCAGAAGG 7300 >seq3968 Length=9653 Score = 104 bits (114), Expect = 2e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGC 38384 |||| |||| ||||| || || || |||||| ||||| ||||| | || | ||| ||| Sbjct 9646 AAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGC 9588 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| |||| ||||| || | |||||||||||||| ||||| | || || Sbjct 9587 AAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACACTC 9528 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||||| || | ||||| Sbjct 9527 CACCTGGTGCTGCGTCTGCGTGGCGG 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500132229733760